Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0136 ATGGGCCGGTTTTGTAATATCCTCTTCTTCCTTTGTGCCGTCACCATTCACCTTTCAATCGGTACTGCTCAAGTGCGATTCACTTTCAAAAAACATGCGTGTGTAGCTTCGGGTAATTACAGCGCCAACAGCACATACTCCACTAGCCTTAACATCGTCCTCTCTTCTCTGTCTGCTAATGCTAGCCGCCCCGACCGGTTTTACAACACCACTGCCGGCCTGAGCCCTGATGACAAGGTTTATGGCATCTTCCTATGCAGAGGGGACACCAAACCCCAGCTATGCCAAGATTGTGTCAAGGCTGCCAGTGAGGACCTAGTAAATCGGTGCCCAAACCAGAAAGAGGCAATCATATGGTTTGATGTGTGCATGGTGCGGTACGCCAACCGTGCCATATTCTCCTACATGGAACAAAGGCCTAGAGGGTCTGCACAGAGTCCAACTGCTATCCGCTCAGACTCGGGTGAGTTTAATAGGATTTTGGGAGATTTGATGGACAGGCTGGTGACAAGAGCCGTCTCAGGATCTCCTCAGGACATGTTTGCTATTGAAGAAGTGAAAGTAACAGATTTCAGGAACTTGTATGGATTGGTGCAGTGCACTCCAGATATATCTCAACATTTCTGTAATGTTTGCTTGAGAAATGCATTAGGTGATATTCCAACGTGCTGTGGCTGGAGGGAGGGTGGAAGAGTTCTTGCACCGAGTTGCACTATAAGATATGAATCAGGCCCCTTTTTCGAAACCAATGGAACGACAGTGCCATCGTCTCCTCCTGCGACTTCATCTTCGCAGCCACCAACCAACCCAACCATCGCTCCTGGAAAGAGGAGTAAGATATCCAAAATTGTCCTGACTACGGCGGTTCATTTTGCAACAAACAATTTTTCAAATGGTAATACGCTTGGAAGGGGTGGATTCGGTGATGTTTACAAGGGAGTACTTTCAAATGGACAAGAAATAGCGGTGAAGAGGCTATCAAAGAAAACTGATCAAGGTGAACCAGAGTTTAAAAATGAAGTTCTACTATTGGCCAAACTTCAACATAGGAATTTGATTAGACTCCTAGGTTTTTGCCTAGACGGAGAGGAGAGACTTCTCATTTATGAGTTCCTGCCCAATTCAAGCCTTGATCACTTCATCTTTGATCCTGCTAATAGGGTATGTTTGGACTGGGAGAGGCGTCATAGAATCATAAAAGGCATTGCACGTGGACTTCTATACTTACATGAAGATTCTCGTCTTCGAATAGTCCATTGTGATCTCAAAGCTAGCAACATCCTTCTAGATGAAGATATGAATCCTAAAATTTCAGATTTTGGTATGGCAAGGTTGTTTTCAATGGATGAAACTCATGCTAATGCGAGTCGAATTGCAGGAACCTAG 1386 0.4509 MGRFCNILFFLCAVTIHLSIGTAQVRFTFKKHACVASGNYSANSTYSTSLNIVLSSLSANASRPDRFYNTTAGLSPDDKVYGIFLCRGDTKPQLCQDCVKAASEDLVNRCPNQKEAIIWFDVCMVRYANRAIFSYMEQRPRGSAQSPTAIRSDSGEFNRILGDLMDRLVTRAVSGSPQDMFAIEEVKVTDFRNLYGLVQCTPDISQHFCNVCLRNALGDIPTCCGWREGGRVLAPSCTIRYESGPFFETNGTTVPSSPPATSSSQPPTNPTIAPGKRSKISKIVLTTAVHFATNNFSNGNTLGRGGFGDVYKGVLSNGQEIAVKRLSKKTDQGEPEFKNEVLLLAKLQHRNLIRLLGFCLDGEERLLIYEFLPNSSLDHFIFDPANRVCLDWERRHRIIKGIARGLLYLHEDSRLRIVHCDLKASNILLDEDMNPKISDFGMARLFSMDETHANASRIAGT* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0136 461 ProSiteProfiles Protein kinase domain profile. 296 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0136 461 FunFam Cysteine-rich receptor-like protein kinase 10 267 371 - -
Vvi15g0136 461 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 461 - -
Vvi15g0136 461 SMART serkin_6 296 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0136 461 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Vvi15g0136 461 MobiDBLite consensus disorder prediction 250 275 - -
Vvi15g0136 461 Gene3D Phosphorylase Kinase; domain 1 268 371 - -
Vvi15g0136 461 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Vvi15g0136 461 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Vvi15g0136 461 FunFam Os07g0541700 protein 372 461 - -
Vvi15g0136 461 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Vvi15g0136 461 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Vvi15g0136 461 SUPERFAMILY Protein kinase-like (PK-like) 278 460 IPR011009 -
Vvi15g0136 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vvi15g0136 461 Gene3D - 27 131 IPR038408 -
Vvi15g0136 461 Gene3D - 144 246 IPR038408 -
Vvi15g0136 461 Pfam Protein kinase domain 297 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0136 461 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
Vvi15g0136 461 Gene3D Transferase(Phosphotransferase) domain 1 372 461 - -
Vvi15g0136 461 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0136 Vvi-Chr15 3650826 3653381 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0136 11 461 Receptor kinase-like Gene Family AT4G05200 44.444 1.53e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi15g0136 Pkinase 6.5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0136 - - vvi:100263713 884.019