Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0134 ATGGGCCGGTTTTGTAATATCCTCTTCTTCCTTTGTGCCATCACCATTCACCTTTCACTCGGTACTGCTCAAGTGCTATTCACTTTCAAAAAACATGCGTGTGTAGCTTCGGGTAATTACAGCGCCAACAGCACATACTCCACTAGCCTTAACATCGTCCTCTCTTCTCTGTCTGCTAATGCTAGCCGCCCCGACCGGTTTTACAACACCACTGCCGGCCTGAGTCCTGATGACAGGGTTTATGGCATCTTCCTATGCAGAGGGGACACCAAACCCCAGCTATGCCAAGATTGTGTCAAGGCTGCCAGTGAGGACCTAGTAAATCGGTGCCCAAACCAGAAAGAGGCAATCATATGGTTTGATGTGTGCATGGTGCGGTACGCCAACCGTGCCATATTCTCCTACATGGAACAAAGGCCTAGAGGGTCTGCACAGAGTCCAACTGCTACCCGCTCAGACTCGGGTGAGTTTAATAGGATTTTGGGAGATTTGATGGACAGGCTGGTGACAAGAGCCGTCTCAGGATCTCCTCAGGACATGTTTGCTATTGAAGAAGTGAAAGTAACAGATTTCAGGAACTTGTATGGATTGGTGCAGTGCACTCCAGATATATCTCAACATTTCTGTAATGTTTGCTTGAGAAATGCATTAGGTGATATTCCAACGTGCTGTGGCGGAAGGGAGGGTGGAAGAGTTCTTGCACCGAGTTGCACTATAAGATATGAATCAGGCCCCTTTTTCGAAACCAATGGAACAACAGTGCCATCGTCTCCTGCTGCGACTTCATCTTCGCAGCCACCAACCAACCCAACCATCCCTCCTGAAAAGAGGAGTAAGATATCCAGAATTGTCCTGACTACGGCTGTTCCTACAGTAATAGTTGTGCTTATCATTCTCATATGGTTCATTGTGAGGTGGAATTGCAAAGAGAAAGTTGAAAATGATGAAATTATAAGTGTGGAATCCTTACAATTCAACTTTAGTACTATTAAAGTTGCAACAAACAATTTTTCAAATGGTAATACGCTTGGAAGGGGTGGATTCGGTGATGTTTACAAGGGAGTACTTTCAAATGGACAAGAAATAGCGGTGAAGAGGCTATCAAAGAAAACTGATCAAGGTGAACCAGAGTTTAAAAATGAAGTTCTACTATTGGCCAAACTTCAACATAGGAATTTGATTAGACTCCTAGGTTTTTGCCTAGAAGGAGAGGAGAGACTTCTCATTTATGAGTTCCTGCTCAATTCAAGCCTTGATCACTTCATCTTTGATCCTGCTAATAGGGTATGTTTGGACTGGGAGAGGCGTCATAGAATCATAAAAGGCATTGCACGTGGACTTCTATACTTGCATGAAGATTCTCGTCTTCGAATAGTCCATTGTGATCTCAAAGCTAGCAACATCCTTCTAGATGAAGATATGAATCCTAAAATTTCAGATTTTGGTATGGCAAGGTTGTTTTCAATGGATGAAACTCATGCTAATGCGAGTCGAATTGCAGGAACCTAG 1509 0.438 MGRFCNILFFLCAITIHLSLGTAQVLFTFKKHACVASGNYSANSTYSTSLNIVLSSLSANASRPDRFYNTTAGLSPDDRVYGIFLCRGDTKPQLCQDCVKAASEDLVNRCPNQKEAIIWFDVCMVRYANRAIFSYMEQRPRGSAQSPTATRSDSGEFNRILGDLMDRLVTRAVSGSPQDMFAIEEVKVTDFRNLYGLVQCTPDISQHFCNVCLRNALGDIPTCCGGREGGRVLAPSCTIRYESGPFFETNGTTVPSSPAATSSSQPPTNPTIPPEKRSKISRIVLTTAVPTVIVVLIILIWFIVRWNCKEKVENDEIISVESLQFNFSTIKVATNNFSNGNTLGRGGFGDVYKGVLSNGQEIAVKRLSKKTDQGEPEFKNEVLLLAKLQHRNLIRLLGFCLEGEERLLIYEFLLNSSLDHFIFDPANRVCLDWERRHRIIKGIARGLLYLHEDSRLRIVHCDLKASNILLDEDMNPKISDFGMARLFSMDETHANASRIAGT* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0134 502 MobiDBLite consensus disorder prediction 252 275 - -
Vvi15g0134 502 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Vvi15g0134 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vvi15g0134 502 SMART serkin_6 337 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0134 502 SUPERFAMILY Protein kinase-like (PK-like) 317 501 IPR011009 -
Vvi15g0134 502 ProSiteProfiles Protein kinase domain profile. 337 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0134 502 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 502 - -
Vvi15g0134 502 MobiDBLite consensus disorder prediction 252 266 - -
Vvi15g0134 502 FunFam Os07g0541700 protein 413 502 - -
Vvi15g0134 502 FunFam Cysteine-rich receptor-like protein kinase 10 142 246 - -
Vvi15g0134 502 FunFam Putative G-type lectin S-receptor-like serine/threonine-protein kinase 299 412 - -
Vvi15g0134 502 Pfam Salt stress response/antifungal 34 129 IPR002902 -
Vvi15g0134 502 Pfam Salt stress response/antifungal 152 243 IPR002902 -
Vvi15g0134 502 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 27 132 - -
Vvi15g0134 502 Gene3D Transferase(Phosphotransferase) domain 1 414 502 - -
Vvi15g0134 502 ProSiteProfiles Gnk2-homologous domain profile. 139 246 IPR002902 -
Vvi15g0134 502 Gene3D Phosphorylase Kinase; domain 1 302 412 - -
Vvi15g0134 502 Pfam Protein kinase domain 338 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi15g0134 502 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Vvi15g0134 502 Gene3D - 143 246 IPR038408 -
Vvi15g0134 502 Gene3D - 27 131 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0134 Vvi-Chr15 3513645 3516260 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0134 11 502 Receptor kinase-like Gene Family AT4G05200 48.024 4.03e-155 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi15g0134 Pkinase 2.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0134 - - vvi:100247260 966.066