Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0113 ATGTTTGGTGTTCCGAAGGGAACATCGAATAACGGCTTGGACATACCGCATAGTGACAAGGGATTTGTTGGACTCTCAAATGATAGCAAGCAGCTTGATGCCAAGGTTCATCGAAAGTGTATTTGTGGTGATTGTGACAGCTCATATATGGAGACTTTGATGAATAATGAACCAAGGAAGTACCAACCTCATTTCAAGGAATATATCAAGAAGAGAGTTGAATCAGATGGTCTTCCTTTCACAACTCCATTGGTGAGGGAGTTCACAAGAAATCCCAATCTCCACCTTGTGCAGTCCCTTGCTCTTATTCCTCCAACAAAGCTCGTCCTCAACATCTCCGTTGAAGAATATGGGGATCGTTTCACCAAAGCTGCTAAGGTTGAGGAGACCCAGTTGCCGAATCCATGTTCTCTCTACAACGAGGTTTCCACCAAAGCGAACACGCCTTTCTGA 453 0.4437 MFGVPKGTSNNGLDIPHSDKGFVGLSNDSKQLDAKVHRKCICGDCDSSYMETLMNNEPRKYQPHFKEYIKKRVESDGLPFTTPLVREFTRNPNLHLVQSLALIPPTKLVLNISVEEYGDRFTKAAKVEETQLPNPCSLYNEVSTKANTPF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0113 150 Gene3D - 1 95 - -
Vvi15g0113 150 PRINTS Ribosomal protein L5 signature 7 26 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi15g0113 150 PRINTS Ribosomal protein L5 signature 49 69 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi15g0113 150 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 78 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0113 Vvi-Chr15 2959474 2960538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0113 1 78 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 51.282 1.28e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0113 K02932 - vvi:100264558 102.834