Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0109 ATGCTGACTTTGAATCTTGTTCCTTGTAGCAATATCACTTTATCCAAGCCAAAAAGCCATCAGTACTCTATAAATGCTCTCCACAGGGCTCAGAACCAAGGTGACTTCCACTTGCCTAGGGGTCTGTTCAACAAGCCCAAGTCTCAGGTAATCTCAAACTTGAGTAGAATCCATGGATACCCTTTTGGGTTTTGTGCAAAACCCAGTTCTCAGATCCATGATACAAGCGCAAAGATCAAATCTTTGGACACAACGGGTGAGCACCCATCTGGGGTTGGTGCAAAGCCCAGATCTTGGGTTGCTAAAGCTGCTGAGTTTGAGGGGGAAAGTGAAGTTTCCAAGCCTAACAAGACCCTTCAACTTGGTATTGTGTTTGGGATGTGGTATTTTCAGAATATTGTGTTCAATATCTACAACAAGAAGGTGTTGAATCTGTTCCCCTTTCCATGGCTTCTTGCCTCTTTTCAGCTATTTGTTGGGTCTGTTTGGATGCTCATTCTCTGGTCTTTTAAGCTCCAGCCATGCCCAAAAATCTCAAAACCTTTCATTGTTGCTCTTCTTGGGCCTGCACTGTTTCACACAATAGGCCACATCTCCGCCTGTGTTTCTTTCTCTAAGGTGGCTGTCTCGTTCACCCATGTCATCAAATCTTCAGAACCAGTTTTCTCAGTCATTTTCTCAACCATTTTAGGTGATAACACCTACCCTTTACGTGTCTGGCTTTCAATCCTCCCCATTGTTCTAGGTTGCTCTCTTGCCGCTGTCACCGAAGTCTCCTTCAATTTGCAAGGCCTGTGGGGGGCTTTGATCAGCAATGTGGGGTTCGTTCTTCGCAACATTTACTCAAAGCGAAGCTTAGAGAGCTTCAAGGAAGTGAATGGGCTGAATTTATATGGTTGGATCAGTATAATTTCATTGCTGTATCTGTTTCCTGTGGCAATTTTCGTTGAAGGGACTCAATGGATTGAAGGGTATCACAGAGCAATCCAAGCAGTGGGAAAACCAACCACATTTTATATATGGGTGATGTTGTCCGGGGTGTTTTACCATCTCTACAATCAGTCATCATATCAAGCACTTGATGACATTAGCCCACTGACCTTCTCTGTTGGAAACACAATGAAGAGGGTGGTAGTGATTGTAGCCACTATTTTGGTGTTCAGAAATCCTGTTAAGCCTTTGAATGCGCTTGGATCTGCCATTGCGATTTTTGGGACTTTCTTGTATTCGCAGGCAACATCCAAGAAAAGCCCAAAGAAAATTGAAGGTGAAAAGAGTAGTTAA 1284 0.4361 MLTLNLVPCSNITLSKPKSHQYSINALHRAQNQGDFHLPRGLFNKPKSQVISNLSRIHGYPFGFCAKPSSQIHDTSAKIKSLDTTGEHPSGVGAKPRSWVAKAAEFEGESEVSKPNKTLQLGIVFGMWYFQNIVFNIYNKKVLNLFPFPWLLASFQLFVGSVWMLILWSFKLQPCPKISKPFIVALLGPALFHTIGHISACVSFSKVAVSFTHVIKSSEPVFSVIFSTILGDNTYPLRVWLSILPIVLGCSLAAVTEVSFNLQGLWGALISNVGFVLRNIYSKRSLESFKEVNGLNLYGWISIISLLYLFPVAIFVEGTQWIEGYHRAIQAVGKPTTFYIWVMLSGVFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVATILVFRNPVKPLNALGSAIAIFGTFLYSQATSKKSPKKIEGEKSS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0109 427 PANTHER SOLUTE CARRIER FAMILY 35 120 414 - -
Vvi15g0109 427 Pfam Triose-phosphate Transporter family 119 410 IPR004853 -
Vvi15g0109 427 SUPERFAMILY Multidrug resistance efflux transporter EmrE 156 254 - -
Vvi15g0109 427 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 119 418 IPR004696 GO:0016020|GO:0022857|GO:0055085
Vvi15g0109 427 SUPERFAMILY Multidrug resistance efflux transporter EmrE 301 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0109 Vvi-Chr15 2868389 2869672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0109 58 425 Antiporters AT5G17630 74.536 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0109 K15283 - vvi:100265967 860.136