Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0093 ATGAAGATTCGGATGCTAACCAAAGAGAACCCAGATAACAAAATTCGTATTGCCAACAGAGGAGGAATCCCTCCTCTGGTTCAACTCCTGTCCTATCCAGATTCCAAGCTTCAAGAACACACTGTAACAGCCCTTTTGAACTTGTTAATTGATGAGGCAAACAAAAGACTCATAACTAGAGAAGGAGCCATTCCAGCTATAATTGAAATTTTGCAGAATGGAACAGATGAGGCCAGAGAAAACTCTGCTGCAGCCCTCTTCAGCTTGTCAATGCTCGACGAAAACAAAGTAACAATTGGGTCTTTAAATGGGATCCCTCCCTTGGTAAACCTCCTGCAGAATGGAACAACCAAAGAGAAGAAGGATGCAACCACTGCCTTGTTTAACCTGTCACTCAACCCATCCAATAAGTTGTGA 417 0.4293 MKIRMLTKENPDNKIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLLIDEANKRLITREGAIPAIIEILQNGTDEARENSAAALFSLSMLDENKVTIGSLNGIPPLVNLLQNGTTKEKKDATTALFNLSLNPSNKL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0093 138 PANTHER U BOX DOMAIN-CONTAINING 2 137 - -
Vvi15g0093 138 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 21 63 IPR000225 GO:0005515
Vvi15g0093 138 SMART arm_5 92 132 IPR000225 GO:0005515
Vvi15g0093 138 SMART arm_5 51 91 IPR000225 GO:0005515
Vvi15g0093 138 SMART arm_5 10 50 IPR000225 GO:0005515
Vvi15g0093 138 Pfam Armadillo/beta-catenin-like repeat 10 49 IPR000225 GO:0005515
Vvi15g0093 138 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Vvi15g0093 138 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 62 104 IPR000225 GO:0005515
Vvi15g0093 138 SUPERFAMILY ARM repeat 3 136 IPR016024 -
Vvi15g0093 138 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 138 IPR000225 GO:0005515
Vvi15g0093 138 FunFam RING-type E3 ubiquitin transferase 1 138 - -
Vvi15g0093 138 Gene3D - 3 138 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0093 Vvi-Chr15 2413630 2414046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0093 26 138 U-box Gene Family AT5G42340 32.174 2.66e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0093 - - vvi:109124023 267.7