Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0064 ATGGACTCTTTGGCAAGAAATCGAAGCACCAAAGCTGAAAACTCCAAAATGGAAGAATCTGGGGGCCAAACTTCAGAAGAGCCTGCAACTAAGTTTCAAGCAGATGAAATTCATCCCCTTTTGGGGAAACCATACTTTCATGTGGTTCTTGTAAAATCACATTTGAATCAAATGGTGCTTCCTACCAAAATGCATCCATCAGTTCCTTCTGCTGTGATTCCTGCAGTTCTTGTCCATCAGGACAAGAGATGGGAGATGACTTTTAATGGAGATCACCGTACCCACAAACGGTTTGATATTGGCTGGAGAACATTTGTCAATGACAACAACCTGAAAGCTGGAGATGCATGTGTATTTGAACTCATGGAGTGCAATACTAGCAATATCAAGTTCAGAGTTCAAATTCTCAGAGGTGATATCCCATCTATGTTGTTAGACAGGGCAAATGGTGAAACTTCAGATACTGCTATTGTCATTGAGTAG 483 0.412 MDSLARNRSTKAENSKMEESGGQTSEEPATKFQADEIHPLLGKPYFHVVLVKSHLNQMVLPTKMHPSVPSAVIPAVLVHQDKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDIPSMLLDRANGETSDTAIVIE* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0064 160 CDD B3_DNA 44 137 IPR003340 GO:0003677
Vvi15g0064 160 MobiDBLite consensus disorder prediction 1 15 - -
Vvi15g0064 160 ProSiteProfiles B3 DNA-binding domain profile. 82 139 IPR003340 GO:0003677
Vvi15g0064 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 9 140 IPR044837 -
Vvi15g0064 160 MobiDBLite consensus disorder prediction 1 29 - -
Vvi15g0064 160 Gene3D - 20 139 IPR015300 -
Vvi15g0064 160 SMART B3_2 46 139 IPR003340 GO:0003677
Vvi15g0064 160 Pfam B3 DNA binding domain 55 137 IPR003340 GO:0003677
Vvi15g0064 160 SUPERFAMILY DNA-binding pseudobarrel domain 43 140 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0064 83 139 REM Transcription Factor Family AT4G33280 43.103 3.58e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vvi15g0064 B3 1.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0064 - - vvi:100255684 328.561