Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0051 ATGTACGCAGGATTGGGTAGCTTGGCTGCTTGCTATTGGATGTTTTCATCAATTCGTGAGCCGGATTTGGTGTGTCAGACTGCAATGCAGAGTGATGTCATCGCGAGGCTTCCAAAAGGTAGTTTTGGTACAACAATTGAGATACTGGATGGGAATTTCTCTTGGGATTTACCTTCCCCTAATCCAACGTTGAAGAATATTAATTTGCGGGTGTGCTGTGGCATGAGGATTGCTGTTTGTGGTACTATAGGCTCAAGTAAATCAAGTTTACTCTCCTGTATGATGGGAGAGGTGCCTAAGACATCTGGTGTCCTTAAGCTGTGTGGAACAAAGGCATGTGTTGCTCAGTCTCCTTGGATACAGAGTGGTATGATAGCAGAGGATATCTCGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAATGATCCTTGATGCATGTTACTTGAAAAAGGACCTAGAGGTTCTCTCATTCGGTGACCAGACAGTTATAGGTGAGTGGGGAATCAATCTGAGTGGTGGCCAGAAGCAGAGAATACAGATTGCACGTGCGCTTTACCAAAACACTGATATTTATCTGTTTGATGATCCTTTCAGTGCAGTGGATGCTCATATAGGAACCCATCTCTTTAAGAGATGTTTGCTTGGTCTTTTGGGTTCAAAAACATTGATTCATGTTACACACCAAGTAGAGTTCTTACCTGCTGTTGACCTCATACTGGTTATCAAGATAGAAGCTAACCTGGTACTAGTAAAATTGATGAGTAGTTCGAGTACCTCCAATGGTGATTTAGGCTCTTCATCAAGTGATTTGGACCTAGGCACTTCGTCAGATATTGGATCAGAATGTGTTTCTACAATTTTGGAATTAGAAGCTCAACCATTGTTTCCATCACCTGCGACGAAGAAGTTATCACAGGCTACACGTCTTTTGAATATGTTGTTTCTTGACTGCCCAACACGACCTTTTGCAGTTGATGCATGGCTGCCATGTTCATCTGACATGATTCTGGACAACCTGAAATCAATAACTTTTGCTTGTAGTTTCTCATCCAACAAAATGTTGGAAGTCTTGACATCTTTGTGGATTATAGGTAGCTTGCAACCATTATGTAAATACTCTAATGCTTATGCTCAACCTGAGTATCATCTTTCAAGCAGCCACCATATACTGTTCCAAATCCTCCTCTACCAAGTCCACGAGATAGTGACCACACTCGAGAAGACTAGAACTGATGGAGATTTACCTTCCTCACTGTCAGATATCACTGCTCTTGAGGAGTCTTTTACTGCTTCTGGCGGGAAGTTCATCTTTATGCAAAGGCTTCATGACTTTGACGTTTTACAGCATAAAACTTTTCCTTTTATTGAGGGAGTTGAAGAGCAAATGCAGAAGTTTCATGAAGAGCGTACATCAGCTGTCTTAGAAAGGAGAGCTAGGAACCATTTCAATGAAAAATTGCTTTCTTCTCGCAGATTGTCTGAATTGCAACTCACCTTCTTCGATTACGATGAAGTCGACACCATCCTCGCTGATTTCTTTGATGGCCTTATAAGTATTTGGATCCTTGCTCTGAATGGCAATTCGTTCAATGCAACTACTGGTTTACATCATTTGCAGGGACAATTAGAAAGCTATCAGTCACCAAAACTGAAACGTCAGAATGGAATCCCACTGGCTAGAACCTTGTTGGCAGTTAGCTTAGTTTCTCCTGCAATGGCTCCAGCAGGGACAGCATAG 1740 0.4201 MYAGLGSLAACYWMFSSIREPDLVCQTAMQSDVIARLPKGSFGTTIEILDGNFSWDLPSPNPTLKNINLRVCCGMRIAVCGTIGSSKSSLLSCMMGEVPKTSGVLKLCGTKACVAQSPWIQSGMIAEDISFGKEMDRERYEMILDACYLKKDLEVLSFGDQTVIGEWGINLSGGQKQRIQIARALYQNTDIYLFDDPFSAVDAHIGTHLFKRCLLGLLGSKTLIHVTHQVEFLPAVDLILVIKIEANLVLVKLMSSSSTSNGDLGSSSSDLDLGTSSDIGSECVSTILELEAQPLFPSPATKKLSQATRLLNMLFLDCPTRPFAVDAWLPCSSDMILDNLKSITFACSFSSNKMLEVLTSLWIIGSLQPLCKYSNAYAQPEYHLSSSHHILFQILLYQVHEIVTTLEKTRTDGDLPSSLSDITALEESFTASGGKFIFMQRLHDFDVLQHKTFPFIEGVEEQMQKFHEERTSAVLERRARNHFNEKLLSSRRLSELQLTFFDYDEVDTILADFFDGLISIWILALNGNSFNATTGLHHLQGQLESYQSPKLKRQNGIPLARTLLAVSLVSPAMAPAGTA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0051 579 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 269 IPR003439 GO:0005524
Vvi15g0051 579 Pfam ABC transporter 64 198 IPR003439 GO:0005524
Vvi15g0051 579 CDD ABCC_MRP_domain1 46 243 - -
Vvi15g0051 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 243 IPR027417 -
Vvi15g0051 579 Gene3D - 30 257 IPR027417 -
Vvi15g0051 579 SMART AAA_5 73 246 IPR003593 GO:0016887
Vvi15g0051 579 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524|GO:0016887
Vvi15g0051 579 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 47 256 - -
Vvi15g0051 579 FunFam ABC transporter C family member 5 31 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0051 Vvi-Chr15 1475561 1480262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0051 46 243 Calmodulin-binding Proteins AT2G36910 29.245 7.99e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0051 - K05666 vri:117905458 385.956