Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0018 ATGTCGGAAGCAGGTATTTCTGGTGAAGTCGAAGATGTGGTGGCATGGCCTGATTATCATCCCAAAATTATGGCTGGCAGTCCATTTAGAAGCTTTGATATTAACAAGGTGCTGGAGTTTGGTGCATTATTGGCATCTGGGGGACAGGAGTATGATATTGCAAGTGATAATACCAAGAATCCAAGGGATCGATTGGCTCGTCAGAAACAAAATCTTCGACGTCGTTTGGGTTTGGACATGTGTGAGCAGTTCATGGATGTCAATGATATGATACGAGATGAAGACCTTATTGTACATAAGTTTAACCCCCAAGGAAATGGAATAGATAACAGATTTAACAATTCACAATCTGTTCATAGTATTCAACGACTGGTTGCTAATATGGTTCCCACTATCATATCTAAAAGGCCAAGTGCAAGGGAATTGAATCTCTTAAAACGAAAGGCAAAAATAAATTCGAAAGACCAAACAAAAGGTTGGTCTGAGGATGGAGATACAGCAGAAGTGTTGACAACACCTAAGGAATCCTGTCCAGAATCCTTACATTCAGACAAGGTATTCATGGATCCTATTGTAGACGAAGACAACTTTGACCATGATGGAGATGGGCGATGGCCTTTCCATAGTTTTGTTGAACAACTTCTACTTGATATGTTTGATCCAGTGTGGGAGATTCGCCATGGTAGTGTCATGGCTTTGAGAGAAATTTTAACCCATCAAGGTGCTTCTGCTGGAGTGTTGATGCCTGACCTTAGCTCAGGTGCTGCATCATTTATTGAATTAAAAGAAAAAGATAATTCAAACACATTAAAGAGAGAGAGAGAGATTGATTTGAATATGCAAGTTCCAGCCGATGAATCAGAGCCAAACTTGAAAAGGCTGAAGTCTGAAGATCTATCATCTCCATTGATGGATACAGTGGGTTCTGCTGGCAATCATGCTAACTTGGATATCAGAATAAGGGTTGAAGACAGTGGATGCAATTTGCCTGCTTGGCAAGCTAATGGAGAACTTGATGTTAGTTCTGTTAAGGTGAAGCCTGAATCTTATATTGATGGTGCATGTTTTCCATGTAAAGAAGATGTTGACATGGGTGGTGGACTGAAGGGTGATCATGAAGATAAGAATTGCATAGGAAAGATGGATGTACTGAAAAATCTTCCAGAAAATTGTGAGCTGATGAACTTGATTAAGGTGGCTAGGCATTCTTGGCTTAAAAATAGTGAATTTCTTCAAGATTGTGCGATTCGGTTTTTGTGTGTATTGTCCTTAGACCGGTTTGGAGACTATGTATCTGATCAAGTTGTTGCACCAGTGCGAGAAACTTGTGCTCAAGCATTAGGTGCTGTGCTTAAATACATGCATCCCCCATTGGTTCATGAAACATTGAATATCTTGCTACAAATGCAGTGTAGACCAGAATGGGAGATTCGTCATGGGAGCCTTTTGGGTATCAAGTATTTGGTTGCTGTGCGACAGGAGATGCTTCATAATTTGCTTGCCCATGTTCTTCCTGCTTGTAAAACTGGGCTGGAGGATCCCGATGATGATGTCAGAGCAGTTGCTGCAGATGCTTTAATACCTACTGCAGCTTCTATTGTCTCTCTAAAGGGTCAAACATTGCATTCTATTGTTATGCTGCTTTGGGATATTTTGCTTGACCTGGATGATCTAAGTCCATCCACTAGCAGTGTAATGAATCTGTTGGCAGAAATCTATTCTCAGGAAGAGATGATTCCTAAGATGTTTGGGGCATTGGCATCAAAAGAGAAACAAGAACTTGATCTGAATGAAGTAGTTTGCATTGATGATCTTGGGGAAGGGATAAATATCCAGGAAAATCCTTATATGTTGTCGACTCTGGCACCACGATTGTGGCCATTTATGAGGCATAGTATCACCTCAGTCCGATATTCAGCTATTCGTACTTTGGAGCGGCTTCTTGAAGCTGGGTACAAAAAGAACATCTCTGAACCCTCAACTAGTTCTTTTTGGCCGTCTTTTATTTTGGGCGATACATTGAGGATTGTTTTTCAGAACTTGCTGCTAGAATCAAATGAGGAAATTTCACAATGTTCTGAGAGGGTTTGGAGGCTTCTTCTTCAGTGCTCGGTGGGTGACTTGGAAGATGCTGCAAGGTCATATATATCTTCTTGGATAGAATTAGCAACCACTCCCTATGGCTCACCATTGGATTCTACAAAAATGTTTTGGCCTGTGGCCCTTCCTCGAAAAAGTCATTTCAGGGCAGCAGCTAAAATGAGAGCTGTGAAGCTTGAAAATGACTCTTGCAGAAACATTGGCTTGGATTTTACAAAAGAAACTAATTTGCAAGAAAGAAATGGAGATTCTTCTGCCAATTCTGTTAAGATAATTGTTGGTGCTGATTTGGAAAAGTCAGTGACCCATACTCGAGTAGTTACAGCAGCTGCGTTGGGCATTTTTGCATCTAAGTTGCATGAGGGCCCTATTCAATATGTGATTGATCCATTGTGGAAGGCCCTTACCTCTTTATCTGGAGTCCAACGGCAGGTGGTTTCTATGGTTCTTATTTCTTGGTTTAAGGAGATAAAAAGCAGGGATGGCATTGTGCCTGGTTTGCCCAGTTATCTTAAAAACTGGTTATTTGATTTGTTAGCCTGCACTGATCCCGCATTCCCTACAAAAGATTCTCTTGCTCCCTATTGTGAGCTTTCAAGAACATACACTAAGATGCGTGGTGAAGCAAGTCAGTTGTTCCGTGCTGTAGAGTCTTCTGGCCTGTTTGAGAATTTGTTATCAACAACAAAAGTTGACCCAGAAAGCTTGACTGCAGATGATGCAATGAGTTTTGCATCAAAACTCTCACTGCTAGTCGGTGATACTTCTGGAGAGGAATCTATGGGAAGGAACATTGTTGATGACTTAGAATCATTAAAACAAAGACTTTTAACTACTTCAGGCTACTTAAAATGTGTTCAGAGTAATTTGCATGTTAGTGTATCGGCCTTAGTTGCAGCTGCAGTTGTCTGGATGTCAGAGCTTCCTGCAAAACTTAATCCAATTATTTTGCCTTTGATGGCTTCTGTTAAAAGGGAGCAGGAGGAAATACTGCAACAGAAGGCAGCTGAGGCACTTGCGGAGCTTATTTGCCGTTGTATTACACGTAGACCTGGTCCAAATGATAAGTTGATTAAGAATCTTTGTAGTTTGACATGCATGGATCCTTGTGAGACACCTCAAGCTGGAGCCATTAGTTCCATGGAGGTTATTGAAGATCAAGATCTTCTCTCATTTGGGAGTAGTACGGGTAAACAGAAGTCAAAGGTTCATATTCTAGCTGGTGGTGAAGACAGATCAAAGGTTGAGGGCTTTATTAGCAGACGAGGGTCTGAACTTACATTGAAGCATTTGTGTGAAAAGTTTGGTGCTTCATTGTTTGATAAGCTTCCCAAACTATGGGATTGCCTTACTGAAGTTCTTAAACCTGGTAGTATTGCAGAGTTAACTCCTGAAGATGAAAATGAAACTAAGCCAGTTTTTGAATCCATTAAGGATCCTCAGATCTTGATAAATAATATCCAGGTGGTACGTTCTATCTCTCCTATGCTGGAGGAGACAGTGAAACCAAAACTGCTCACACTTCTACCGTGCATTTTCAAATGTGTTCGCCATTCCCATGTTGCTGTTCGATTAGCTGCTTCCCGGTGTATCACTTCAATGGCCAAGTCAATGACAACAAGCGTCATGGGAGCTGTAATTGAAAATGTCATTCCTATGTTGGGAGATATGTCATCTGTTCATACCAGACAAGGTGCTGGTATGCTTGTTAATTTGCTTGTTCAGGGATTGGGTGTGGAGTTGGTTCCCTATGCTCCTTTGCTAGTTGTTCCTCTCCTCAGGTGTATGAGTGATTGTGATCATTCAGTCAGGCAGAGTGTGACACATAGTTTTGCCGCCCTTGTTCCTCTTCTTCCATTAGCTCGGGGTGTTTCTCCACCTGTTGGACTGAGTGAAAGTTTATTGAAAAATACTGAAGATGCACAATTTCTTGAGCAACTTCTTGACAACTCCCACATTGATGATTACAAGCTCTCTACTGAATTAAAAGTGACACTGAGGAGGTATCAACAGGAAGGTATAAATTGGTTGGCTTTTCTAAGACGTTTCAAGCTTCATGGGATCTTATGTGATGATATGGGCCTTGGTAAAACACTTCAAGCTTCGGCAATTGTGGCATCTGACATAGAAGAGCACCGTACCTCAAAAGATGGCGCATATCCTCCATCTTTAATTATTTGCCCATCAACACTTGTTGGACACTGGGCCTATGAGATAGAAAAGTATATTGACTCTTCTGTCATAACTACACTTCAATATGTTGGTTCTGCTCACGACCGCATGTCTTTACAAGGTCTTTTTGAAAAGCATAATGTCATCATAACATCATACGATGTGGTCCGTAAAGACGTTGATTATCTTGGGCAGCTTCTCTGGAATTATTGTATTTTAGATGAGGGACATATCATCAAAAACTCAAAGTCTAAAATCACGAGTGCTGTAAAACAGTTAAAAGCCCAACATCGCCTCATATTGAGTGGAACACCAATCCAGAATAACATCTTGGATTTGTGGTCCCTTTTTGACTTTCTAATGCCAGGATTTCTTGGAACAGAGAGACAATTTCAAGCTACTTATGGAAAGCCGCTGCAGGCAGCTAGAGATTCCAAATGTTCTGCCAAGGATGCTGAGGCAGGGGCACTAGCTATGGAAGCATTGCACAAGCAGGTAATGCCTTTCCTTCTCCGGCGGACAAAGGATGAAGTCTTGTCTGATCTGCCAGAGAAGATTATTCAGGACAGATACTGTGACCTGTGTCCTGTGCAATTGAAACTTTATGAACAGTTTTCTGGTTCACATGTGAGACATGAAATTTCTAGTATTGTAAAGCGGAACGAGTCTACAGACACAGGAGAAGGAAATAGTGCTTCACCCAAAGCGTCTTCACATGTTTTCCAGGCACTTCAATACCTGCTAAAACTTTGTGGTCATCCATTGCTTGTTGTTGGTGAAAAGATCCCAGATTCACTTACAACCATTTTGTCAGAATTCTTTCCTGGCACTTCTGACATTATGTCCGAACTTCATAAACTCCACCACTCTCCTAAATTGATTGCTCTTCATGAGATTTTGGAAGAGTGTGGAATAGGTGTGGATGCTTCAAGTTCCGAAGGGGCTGTTAGTGTTGGGCAGCACAGAGTTCTGATATTTGCTCAGCATAAGGCATTCCTGGACATAATTGAAAGAGACTTGTTTCACACCCATATGAAGAGTGTCACTTACTTGCGACTGGATGGTTCTGTTGAACCAGAAAAACGTTTTGAAATTGTGAAAGCTTTCAATTCAGACCCAACTATTGATGTGTTGCTGCTTACAACTCATGTGGGTGGGCTTGGTTTGAACTTGACTTCAGCTGACACCCTCGTTTTTATGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCAATGGACAGAGCGCACAGGTTAGGTCAGCGAAAAGTTGTAAATGTCCATCGTCTAATCATGCGTGGAACTCTGGAAGAGAAAGTTATGAGCCTCCAAAGGTTCAAGCTGTCAGTTGCTAATTCTGTCATTAATTCTGAGAATGCCAGTATGAAAACAATGAATACGGATCAGTTGCTTGATCTATTCACATCTGCAGAGGCATTGAAAAAGGGAGCTGCTCAATCGAAGCGTTCAGATGGCAACTTTGATGGTGACCCGAAATTTGTGGGTAGTGGGAAGGGGTTGAAAGCCATCCTGGGTGGATTGGAAGAGCTGTGGGATCATTCACAGTACACTGAAGAATACAATCTGAGCAATTTCTTGACAAAGCTGAACGGGTGA 5889 0.4162 MSEAGISGEVEDVVAWPDYHPKIMAGSPFRSFDINKVLEFGALLASGGQEYDIASDNTKNPRDRLARQKQNLRRRLGLDMCEQFMDVNDMIRDEDLIVHKFNPQGNGIDNRFNNSQSVHSIQRLVANMVPTIISKRPSARELNLLKRKAKINSKDQTKGWSEDGDTAEVLTTPKESCPESLHSDKVFMDPIVDEDNFDHDGDGRWPFHSFVEQLLLDMFDPVWEIRHGSVMALREILTHQGASAGVLMPDLSSGAASFIELKEKDNSNTLKREREIDLNMQVPADESEPNLKRLKSEDLSSPLMDTVGSAGNHANLDIRIRVEDSGCNLPAWQANGELDVSSVKVKPESYIDGACFPCKEDVDMGGGLKGDHEDKNCIGKMDVLKNLPENCELMNLIKVARHSWLKNSEFLQDCAIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAVLKYMHPPLVHETLNILLQMQCRPEWEIRHGSLLGIKYLVAVRQEMLHNLLAHVLPACKTGLEDPDDDVRAVAADALIPTAASIVSLKGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMIPKMFGALASKEKQELDLNEVVCIDDLGEGINIQENPYMLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKKNISEPSTSSFWPSFILGDTLRIVFQNLLLESNEEISQCSERVWRLLLQCSVGDLEDAARSYISSWIELATTPYGSPLDSTKMFWPVALPRKSHFRAAAKMRAVKLENDSCRNIGLDFTKETNLQERNGDSSANSVKIIVGADLEKSVTHTRVVTAAALGIFASKLHEGPIQYVIDPLWKALTSLSGVQRQVVSMVLISWFKEIKSRDGIVPGLPSYLKNWLFDLLACTDPAFPTKDSLAPYCELSRTYTKMRGEASQLFRAVESSGLFENLLSTTKVDPESLTADDAMSFASKLSLLVGDTSGEESMGRNIVDDLESLKQRLLTTSGYLKCVQSNLHVSVSALVAAAVVWMSELPAKLNPIILPLMASVKREQEEILQQKAAEALAELICRCITRRPGPNDKLIKNLCSLTCMDPCETPQAGAISSMEVIEDQDLLSFGSSTGKQKSKVHILAGGEDRSKVEGFISRRGSELTLKHLCEKFGASLFDKLPKLWDCLTEVLKPGSIAELTPEDENETKPVFESIKDPQILINNIQVVRSISPMLEETVKPKLLTLLPCIFKCVRHSHVAVRLAASRCITSMAKSMTTSVMGAVIENVIPMLGDMSSVHTRQGAGMLVNLLVQGLGVELVPYAPLLVVPLLRCMSDCDHSVRQSVTHSFAALVPLLPLARGVSPPVGLSESLLKNTEDAQFLEQLLDNSHIDDYKLSTELKVTLRRYQQEGINWLAFLRRFKLHGILCDDMGLGKTLQASAIVASDIEEHRTSKDGAYPPSLIICPSTLVGHWAYEIEKYIDSSVITTLQYVGSAHDRMSLQGLFEKHNVIITSYDVVRKDVDYLGQLLWNYCILDEGHIIKNSKSKITSAVKQLKAQHRLILSGTPIQNNILDLWSLFDFLMPGFLGTERQFQATYGKPLQAARDSKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLCPVQLKLYEQFSGSHVRHEISSIVKRNESTDTGEGNSASPKASSHVFQALQYLLKLCGHPLLVVGEKIPDSLTTILSEFFPGTSDIMSELHKLHHSPKLIALHEILEECGIGVDASSSEGAVSVGQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINSENASMKTMNTDQLLDLFTSAEALKKGAAQSKRSDGNFDGDPKFVGSGKGLKAILGGLEELWDHSQYTEEYNLSNFLTKLNG* 1963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0018 1962 Gene3D - 1101 1329 IPR011989 -
Vvi15g0018 1962 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 27 1961 IPR044972 GO:0003677|GO:0016887|GO:0017025
Vvi15g0018 1962 SMART ultradead3 1362 1558 IPR014001 -
Vvi15g0018 1962 FunFam Uncharacterized protein 1101 1329 - -
Vvi15g0018 1962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1598 1900 IPR027417 -
Vvi15g0018 1962 Pfam Helicase conserved C-terminal domain 1742 1844 IPR001650 -
Vvi15g0018 1962 Pfam Domain of unknown function (DUF3535) 696 1149 IPR022707 -
Vvi15g0018 1962 FunFam TATA-binding protein-associated factor 172 1607 1922 - -
Vvi15g0018 1962 SUPERFAMILY ARM repeat 205 1405 IPR016024 -
Vvi15g0018 1962 SMART helicmild6 1758 1844 IPR001650 -
Vvi15g0018 1962 CDD DEXHc_Mot1 1366 1597 IPR044078 GO:0005524
Vvi15g0018 1962 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1378 1547 IPR014001 -
Vvi15g0018 1962 Pfam SNF2-related domain 1385 1679 IPR000330 GO:0005524|GO:0140658
Vvi15g0018 1962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1343 1597 IPR027417 -
Vvi15g0018 1962 Gene3D - 1607 1920 IPR027417 -
Vvi15g0018 1962 Gene3D - 411 647 IPR011989 -
Vvi15g0018 1962 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1336 1596 - -
Vvi15g0018 1962 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1716 1894 IPR001650 -
Vvi15g0018 1962 FunFam SNF2 superfamily chromatin remodeling protein 383 651 - -
Vvi15g0018 1962 Gene3D - 1336 1596 IPR038718 -
Vvi15g0018 1962 CDD SF2_C_SNF 1713 1855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0018 Vvi-Chr15 465233 487036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0018 1338 1898 RAD5 or RAD16-like Gene Family AT1G02670 28.308 1.11e-44 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi15g0018 DUF3535 4.4e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0018 K15192 - vvi:100247209 3828.48