Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi15g0003 ATGGCTGCTCAGGCCTTGGTTTCATCTTCTCTTACTTCCTCAGTGGAGACTGCCAGACAGATACTTGGGTCAAGGCCTCTGCAATCTCCATCAAGGAAGTCTTCTTCCTTTGTGGTCAGGGCAGCTTCTACTCCACCAGTCAAGCAAGGAGCTGACAGGCCCCTCTGGTTTGCATCCAAGCAGAGCCTTACTTACTTGGATGGCAGTCTTCCAGGTGACTATGGGTTCGATCCACTGGGACTTTCAGACCCTGAAGGCACAGGAGGGTTCATCGAGCCAAGATGGTTAGCCTACGGGGAGGTCATCAACGGGCGGTATGCCATGCTGGGTGCTGTTGGTGCGATTGCGCCTGAGATACTGGGGAAGCTGGGCCTCATCCCACCGGAGACCGCCCTGCCTTGGTTCAAAACCGGGGTATTCCCCCCAGCGGGGACATACAACTACTGGGCAGACCCTTACACACTGTTTGTATTCGAGATGGCACTGATGGGATTTGCAGAGCACAGGAGATTCCAAGACTGGGCCAACCCAGGGTCAATGGGGAAGCAGTACTTCCTCGGGCTTGAAAAATACTTGGGAGGGTCTGGCGACCCAGCCTACCCAGGAGGCCCACTGTTCAACCCTCTCGGGTTTGGTAAAGATGAGAAATCCCTCAAGGATCTGAAGCTCAAAGAGGTTAAGAATGGGAGATTGGCTATGTTGGCCATATTGGGCTACTTTGCACAAGGGCCTGTGACAGGAGTCGGGCCCCTCCAAAACCTGCTGGACCATTTGGCAGACCCTGTCAACAACAATATCATAACCAGCCTCAAGTTCCACAACTAG 825 0.5382 MAAQALVSSSLTSSVETARQILGSRPLQSPSRKSSSFVVRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFHN* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi15g0003 274 FunFam Chlorophyll a-b binding protein, chloroplastic 54 272 - -
Vvi15g0003 274 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 8 268 IPR001344 GO:0009765|GO:0016020
Vvi15g0003 274 Pfam Chlorophyll A-B binding protein 64 242 IPR022796 -
Vvi15g0003 274 Gene3D Chlorophyll a/b binding protein domain 55 273 - -
Vvi15g0003 274 SUPERFAMILY Chlorophyll a-b binding protein 52 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi15g0003 Vvi-Chr15 124173 125185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi15g0003 1 273 Chloroplast and Mitochondria Gene Families AT1G61520 87.179 4.68e-168 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi15g0003 K08909 - vvi:100232927 531.561