LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi15g0003	ATGGCTGCTCAGGCCTTGGTTTCATCTTCTCTTACTTCCTCAGTGGAGACTGCCAGACAGATACTTGGGTCAAGGCCTCTGCAATCTCCATCAAGGAAGTCTTCTTCCTTTGTGGTCAGGGCAGCTTCTACTCCACCAGTCAAGCAAGGAGCTGACAGGCCCCTCTGGTTTGCATCCAAGCAGAGCCTTACTTACTTGGATGGCAGTCTTCCAGGTGACTATGGGTTCGATCCACTGGGACTTTCAGACCCTGAAGGCACAGGAGGGTTCATCGAGCCAAGATGGTTAGCCTACGGGGAGGTCATCAACGGGCGGTATGCCATGCTGGGTGCTGTTGGTGCGATTGCGCCTGAGATACTGGGGAAGCTGGGCCTCATCCCACCGGAGACCGCCCTGCCTTGGTTCAAAACCGGGGTATTCCCCCCAGCGGGGACATACAACTACTGGGCAGACCCTTACACACTGTTTGTATTCGAGATGGCACTGATGGGATTTGCAGAGCACAGGAGATTCCAAGACTGGGCCAACCCAGGGTCAATGGGGAAGCAGTACTTCCTCGGGCTTGAAAAATACTTGGGAGGGTCTGGCGACCCAGCCTACCCAGGAGGCCCACTGTTCAACCCTCTCGGGTTTGGTAAAGATGAGAAATCCCTCAAGGATCTGAAGCTCAAAGAGGTTAAGAATGGGAGATTGGCTATGTTGGCCATATTGGGCTACTTTGCACAAGGGCCTGTGACAGGAGTCGGGCCCCTCCAAAACCTGCTGGACCATTTGGCAGACCCTGTCAACAACAATATCATAACCAGCCTCAAGTTCCACAACTAG	825	0.5382	MAAQALVSSSLTSSVETARQILGSRPLQSPSRKSSSFVVRAASTPPVKQGADRPLWFASKQSLTYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKLGLIPPETALPWFKTGVFPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSLKFHN*	275

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi15g0003	274	FunFam	Chlorophyll a-b binding protein, chloroplastic	54	272	-	-
	Vvi15g0003	274	PANTHER	CHLOROPHYLL A/B BINDING PROTEIN	8	268	IPR001344	GO:0009765\|GO:0016020
	Vvi15g0003	274	Pfam	Chlorophyll A-B binding protein	64	242	IPR022796	-
	Vvi15g0003	274	Gene3D	Chlorophyll a/b binding protein domain	55	273	-	-
	Vvi15g0003	274	SUPERFAMILY	Chlorophyll a-b binding protein	52	269	-	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi15g0003	Vvi-Chr15	124173	125185	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi15g0003	1	273	Chloroplast and Mitochondria Gene Families	AT1G61520	87.179	4.68e-168	464

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi15g0003	K08909		-	vvi:100232927	531.561

Showing 1 to 1 of 1 entries