Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1948 ATGCAGCGGTTGGAGTCGTCGTCTTCGATGAGCAATTCCGGCAGTTCGAGTCTACGAGGCATCGGGCTGTCCAACACCATACACTCTGAGGTCGCACCTTGCTTACCGTTGCCTTCGCTTCCAGTGTTCTGTGGGGCGTATGATCAGGAGCTTCGCTTGTTTGACGAGCCCAGGAACGCAAGGTCTTTGAATCGGCGTGATGTGATTAGTCAGGCTAGTAGGATCGCTGATCTGCTCAGAGAGACAGATATTTCTTATCTGAATCTGAGGGATGATGAATGTTCTTTTCCTTATGGGTTTGTGGAGCCTTTAGTCCTTTATGATGAAGTGGTCCGGTGTAATCCTGAAGCATTTGAATACATTACTCCAGGTCATATCAAGGAGCAAATCTGTAGCAGGACAGTATCAGAAAAGAAACCCATTGAGCAGAATGTACCCATTACAAGTCAAGTTCAAAGAGATGGTGGCAATCATAGCCACCAGTCTGATTATATTCTTAATGAAAAATCCACTTCTTCTAGAAAACCAAAAGTCAAGAAGAAAGGAAGTGATGACTTCTTACCATCAGCTGGGCCAGATCCCTATGATCTTCAAGATGCCACCATTGGAAACTTTTCTGAGATGTTGGAGGACTTCTGTGGAAGAGCAGAAATTCCTAGTGATGATCGTGATGAAGCAGAGTGGTTATCAATGCCACTTGCTGATCTTAAAATTCTTGTAAATGAAATAATATCCATCCGTGCAAAGAAACTTCTAAATTTGGTTCCTGTAGATATTCTTGTAAGACTGTTGAGGGTTCTAGATCATCAGATTCATCGAGCTGAAGGCTTGTCTGTTGATGAATGTGAACATTCAGACACCGATGCAGTTTCATCAGTTTTCTGTGCTCTGGAGTCTATTCATGCAGCACTAGCAGTTATGACACATAATGACATGCCAAAGCAGCTTTACAAAGAGGAGATCATTGAAAGAATTCTGGAGTTCTCTAGGCATCAGATAATGGACATAATGTCAGCTTGTGATCCTTCATATCGTGCTTTGCATAAACCAAGTGAAAATGGGGTGCTTGAGGGTGAAGATGATGAAGAGCTGGATGCTGACTTTGGTTCAGCAAGCAAGAAACGACGTAAGAGTGTCAAAGCAAAGAAATCAGCAGCTAACAAGGTTTCTACTGCTGTGAATGCCATACTTCAGAAACTGTGCACTATTCTTGGTTTTCTGAAGGATTTGTTGTTGGTGGAGCGCCTATCAGATAGTTGCGTTCTACAACTAGTGAAAACAAGCTTTACAACATTCTTAGTGGATAATATCCAGCTCTTGCAACTAAAAGCAATAAGTTTGATATGTGGGATATTCTACTCATACACGCAGCATCGCACTTATGTGATAGATGAAACACTTCAGCTGCTTTGGAAGTTACCATTCTCAAAGAGAGCAGTAAGAGCTTATCACCTACCTGATCAAGAACAGAGGCAGATTCAGATGATTACTGCATTGCTGATTCAATTAATTCATTTTAGTGCTAATCTTCCTGAAGCTTTAAGACAAGCATCAAATGGAAACACCATATTGGACGTTTCAATTGATTCCAGTTACCCGATTAAATGCCATGAAGCAGCCACAGAGGCATGTTGTCTCTTTTGGACCCGTGTCCTTCAGCGATTTACAACAGTAAAAACTCAGGATGCCTCTGAGTTGAAAGTGATGATGGAGAATCTTGTTATGGATTTGCTGACAACATTGAATTTACCTGAATATCCTGCTTCAGCTCCTATTCTGGAGGTTCTTTGCGTCTTACTGCTTCAGAATGCTGGGCTGAAATCTAAAGACATCTCTGCACGTTCAATGGCCATTGATCTTCTTGGTACAATTGCTGCAAGGTTGAAGCATGATGCTGTTCTTTGCAGCAGGGATAGATTTTGGATATTGCAAGAATTGGTTGGTGGAGATAGTGTTGATCAAACTCACCCTAAAGATGTCTGTTCGGTCTGTATGGATGGAAGAGTTGAAAGGGCATTGTTTGTATGTCAAGGTTGTCATAGATTTTTTCACGCAGATTGCATGGGAGTAAGAGAACATGAAGTTCCTAGCCGTGGCTGGTACTGTCAGTTCTGCCTCTGCAAGAAGCAACTTCTTGTCTTACAATCATACTGCAAATCACAATGCAAGGATGATGAGAAAAGAAATCGTGCTCGGTCAGATAAGAATTCTGAAGCTAGTGATCCAATTACAAAAGTTGAAATTGTTCAGCAGATGCTTTTAAATTACCTGCATGATGCTGGCTCTTCTGATGATGTGCATCTCTTTGTTCGCTGGTTTTATCTTTGCCTGTGGTACAAAGATGATCCAAAGTCCCAACAAAAGTTCATTTACTACCTTGCTAGATTGAAATCAAAAGCAATTGTGCGTGATTCTGGGACTGCTTTCTCATTGTTAACTAGGGAGTCGGTCAAGAAGATAACACTAGCATTAGGACAAAATAATTCTTTCTCCAGAGGGTTTGATAAGATTCTTCATTTGCTGTTGGCAAGTCTCAGGGAGAACTCTCCAGTAATTAGGGCTAAGGCATTACGTGCAGTTAGTATTATCGTGGAAGCTGATCCAGAAGTTTTGTGTGAGAAACGTGTCCAAGTGGCTGTTGAAGGAAGGTTTTGTGACTCTGCAATATCTGTGAGAGAAGCAGCCCTTGAACTTGTTGGTAGGCATATTGCTTCACATCCTGATGTTGGTTTGAAGTATTTTGAGAAGGTTGCCGAGAGAATAAAGGATACAGGAGTGAGTGTACGGAAAAGAGCGATCAAAATCATCAGAGACATGTGTACTTCCAATGCTAACTTCTCAGAATTTACAAGTGCTTGCAATGAGATCATTTCTCGTGTTAGTGATGAGGAATCTAGCATCCAGGATCTTGTCTGCAAGACATTTTATGAGTTCTGGTTTGAAGAACCATCTGGTTCTCAGACTCAGTTTTTTGGTGATGGTAGTTCTGTTCCACTGGAAGTTGCAAAAAAGACTGAGCAGATTGTTGAAATGTTGAGAAAGATGCCTAATCATCAACTTCTTGTTGCTGTCATTAAGCGCAACTTAGCCCTTGATTTTTTCCCTCAATCAGCTAAAGCTGTTGGGATTAATCCTGTCTCATTGGCATCTGTTCGTAAGCGTTGTGAGTTGATGTGCAAGTGCTTACTAGAAAGGATATTGCAGGTAGAGGAAATGAACAGTGAAGAAGTTGAGGTGTGCACACTTCCCTATGTCCTGGTCTTGCATGCCTTTTGTGTTGTTGATCCAACCCTGTGTGCTCCAGCTTCTGATCCTTCCCAGTTTGTAGTCACTCTACAGCCATATCTGAAGAGTCAGGTTGATAATCGAGTAGTTGCAAAACTACTGGAAAGTATAATCTTCATAATTGATGCTGTTCTGCCCCTGCTTCGAAAGCTTCCACAGAGTATTCTGGAAGAACTTGAGCAAGACCTAAAGCAAATGATTGTTAGGCATTCTTTCTTGACTGTTGTCCATGCCTGCGTCAAGTGCCTTTGCTCAGTAAGTAAAGTAGCAGGAAAAGGTGCAAGTGTAATTGAGTATCTTATTCAAGTGTTCTTCAAACGTTTAGGGGCCATTGGGGTTGACAACAAACAGCAAGTGGGCCGATCTCTTTTCTGTGTTGGGCTGCTTATCCGCTATGGTAACTCTTTGCTGAGCTCCTGCAGTGACAAAAATGTATATGTTACAAGCAGCCTCAACATGTTAAAAAAATATCTTCAGGTGGACGATTTTTTTGTAAAGGTTAGGGCTTTGCAGGCATTAGGATTTGTTTTGATTGCTAGGCCTGAATATATGTTGGAAAAGGATGTTGGAAAAATATTAGAGGCAACATTTTCTTCTAGTTCTGATGCTCATCTTAAGATGCAAGCACTGCAAAACATGTACGAGTATCTTCTTGATGCAGAAAGTCAAATGGGACCTGATAAAACCAGTAATGATGTAGTTAATTATTCTGTAGAAGGTGGTCAGAGTGTGCCAGTAGCTGCAGGTGCTGGTGATGCTAACATTTGTGGGGGAATAGTTCAGTTATATTGGGATAGTATCTTAGCAAGATGCTTGGATGTCAATGAACACGTCCGCCAATCTGCCCTCAAGATTGTGGAAGTTGTGTTACGCCAGGGTCTTGTTCACCCTATTACTTGTGTTCCATACCTTATAGCACTTGAAACAGATCCTCAGGAGGTGAACTCAAAGCTGGCTCATCAGTTGCTGATGAATATGAATGAGAAGTATCCTGCTTTCTTTGAAAGCCGTTTGGGTGATGGCCTTCAGATGTCATTTGTTTTCATACAATCGACAAGTGGCTGTTCTCCTGGAAATTCAAACCCAAAAGTCCAAACCAAGGTACCTGGAAATATGAAGGGGAAATCTGATGGTGGCAGTTTTGCCTATGCAAGGCTTGGAGTTTCTAGAATCTACAAGCTTATTCGTGCAAACCGTGTCTCAAGGAACAAATTTATGTCTTCAATTGTTCGAAAATTTGATACTCCAAGCTGGAATCATTCAGTAATTCCTTTCCTGATGTATTGTACTGAAATTCTTGCTTTGCTACCATTCACATCACCTGATGAGCCCCTGTATTTGATCTATGCTATTAATCGAGTTATACAAGTTAGGGCTGGGACACTTGAGGCAAATATGAAAGCCTTGAGCTTACACTTTTCACAGAGAGATGTCCATAAGATTCATCATGAGAATGGGATTGCTGAACAGGAACCAGCTTCTCAGCCTGTATCCAACTATACAACATTAATGGATGTAAATGGTGCAGCCAAACTAGAGCCAGCTGGTCAGCCTGATTCAGATCATGCTACATCAATGAATTTGAAGACATACATGACATGCTCGGACAGTTCTTGTGATATATCAAAAGATGATCTGCAAAAAATTCAGGCAGACTGTCTTGCAGCCACTGCACTGCAACTTCTCCTGAAGCTGAAGAGGCATTTAAAAATTGTGTATAGCCTCAATGATGCCCGATGCCAGGCTTTCTCTCCAAATGAACCACTAAAAACAGGAGAGGTTCTCACCAAGCAGAATATTCCCTTTTACATTACTGAAATGCACATTGATTCGCCCACCACTCATCAAGAATTGATGCAAAGATATCAGGAGTTTAAGAGTGCCTTGAAGGAAGATACAGTTGATTACTCGGCCTACACAGCAAACATCAAGAGGAAGCGTCCAGCCCCCAGGAGAGGTGTTAAATCTGGTCGTATGATGGGTGGAGATGATGAAGATGAAGATGATGATGATGAAGATTGGACAGGTGGGAGGAGGCAAAGTAACAGTGTCAGGAGAGGCAACAGCAACAGAGGTGGCAGACAGCGGTTGTAG 5379 0.4179 MQRLESSSSMSNSGSSSLRGIGLSNTIHSEVAPCLPLPSLPVFCGAYDQELRLFDEPRNARSLNRRDVISQASRIADLLRETDISYLNLRDDECSFPYGFVEPLVLYDEVVRCNPEAFEYITPGHIKEQICSRTVSEKKPIEQNVPITSQVQRDGGNHSHQSDYILNEKSTSSRKPKVKKKGSDDFLPSAGPDPYDLQDATIGNFSEMLEDFCGRAEIPSDDRDEAEWLSMPLADLKILVNEIISIRAKKLLNLVPVDILVRLLRVLDHQIHRAEGLSVDECEHSDTDAVSSVFCALESIHAALAVMTHNDMPKQLYKEEIIERILEFSRHQIMDIMSACDPSYRALHKPSENGVLEGEDDEELDADFGSASKKRRKSVKAKKSAANKVSTAVNAILQKLCTILGFLKDLLLVERLSDSCVLQLVKTSFTTFLVDNIQLLQLKAISLICGIFYSYTQHRTYVIDETLQLLWKLPFSKRAVRAYHLPDQEQRQIQMITALLIQLIHFSANLPEALRQASNGNTILDVSIDSSYPIKCHEAATEACCLFWTRVLQRFTTVKTQDASELKVMMENLVMDLLTTLNLPEYPASAPILEVLCVLLLQNAGLKSKDISARSMAIDLLGTIAARLKHDAVLCSRDRFWILQELVGGDSVDQTHPKDVCSVCMDGRVERALFVCQGCHRFFHADCMGVREHEVPSRGWYCQFCLCKKQLLVLQSYCKSQCKDDEKRNRARSDKNSEASDPITKVEIVQQMLLNYLHDAGSSDDVHLFVRWFYLCLWYKDDPKSQQKFIYYLARLKSKAIVRDSGTAFSLLTRESVKKITLALGQNNSFSRGFDKILHLLLASLRENSPVIRAKALRAVSIIVEADPEVLCEKRVQVAVEGRFCDSAISVREAALELVGRHIASHPDVGLKYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNANFSEFTSACNEIISRVSDEESSIQDLVCKTFYEFWFEEPSGSQTQFFGDGSSVPLEVAKKTEQIVEMLRKMPNHQLLVAVIKRNLALDFFPQSAKAVGINPVSLASVRKRCELMCKCLLERILQVEEMNSEEVEVCTLPYVLVLHAFCVVDPTLCAPASDPSQFVVTLQPYLKSQVDNRVVAKLLESIIFIIDAVLPLLRKLPQSILEELEQDLKQMIVRHSFLTVVHACVKCLCSVSKVAGKGASVIEYLIQVFFKRLGAIGVDNKQQVGRSLFCVGLLIRYGNSLLSSCSDKNVYVTSSLNMLKKYLQVDDFFVKVRALQALGFVLIARPEYMLEKDVGKILEATFSSSSDAHLKMQALQNMYEYLLDAESQMGPDKTSNDVVNYSVEGGQSVPVAAGAGDANICGGIVQLYWDSILARCLDVNEHVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHQLLMNMNEKYPAFFESRLGDGLQMSFVFIQSTSGCSPGNSNPKVQTKVPGNMKGKSDGGSFAYARLGVSRIYKLIRANRVSRNKFMSSIVRKFDTPSWNHSVIPFLMYCTEILALLPFTSPDEPLYLIYAINRVIQVRAGTLEANMKALSLHFSQRDVHKIHHENGIAEQEPASQPVSNYTTLMDVNGAAKLEPAGQPDSDHATSMNLKTYMTCSDSSCDISKDDLQKIQADCLAATALQLLLKLKRHLKIVYSLNDARCQAFSPNEPLKTGEVLTKQNIPFYITEMHIDSPTTHQELMQRYQEFKSALKEDTVDYSAYTANIKRKRPAPRRGVKSGRMMGGDDEDEDDDDEDWTGGRRQSNSVRRGNSNRGGRQRL* 1793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1948 1792 ProSiteProfiles Zinc finger PHD-type profile. 658 708 IPR019787 -
Vvi14g1948 1792 MobiDBLite consensus disorder prediction 170 186 - -
Vvi14g1948 1792 FunFam Sister chromatid cohesion protein 826 1031 - -
Vvi14g1948 1792 Gene3D - 1027 1424 IPR011989 -
Vvi14g1948 1792 Pfam HEAT repeat associated with sister chromatid cohesion 858 899 IPR026003 -
Vvi14g1948 1792 MobiDBLite consensus disorder prediction 142 195 - -
Vvi14g1948 1792 PANTHER NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED 19 1787 IPR033031 GO:0003682|GO:0010468|GO:0061780
Vvi14g1948 1792 MobiDBLite consensus disorder prediction 142 169 - -
Vvi14g1948 1792 ProSitePatterns Zinc finger PHD-type signature. 661 705 IPR019786 -
Vvi14g1948 1792 MobiDBLite consensus disorder prediction 1741 1792 - -
Vvi14g1948 1792 SUPERFAMILY FYVE/PHD zinc finger 656 713 IPR011011 -
Vvi14g1948 1792 Gene3D - 814 1018 IPR011989 -
Vvi14g1948 1792 Pfam PHD-finger 660 707 IPR019787 -
Vvi14g1948 1792 SUPERFAMILY ARM repeat 606 1428 IPR016024 -
Vvi14g1948 1792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 711 IPR013083 -
Vvi14g1948 1792 SMART PHD_3 660 706 IPR001965 -
Vvi14g1948 1792 Pfam Sister chromatid cohesion C-terminus 1351 1549 IPR024986 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi14g1948 Nipped-B_C 2.5e-52 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1948 K06672 - vvi:100249183 3395.13