Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi14g1937 | ATGCCGTCCGATTGCTATCAGGCCCCAAGTGCCCAGAGTTGGGGAGCCAAGCCCATTGGGTATGCAGTTAGCCTCGCAATACCTCCAAATGGGACAGAGCAGCTGATTACTGCAAATGTGAACTCCATCTTGTGGACTACTTCAACAGTTCAGGCTCGTAGCAGTGGCACTAGGAAGAAGGGAGCAAAGAAAATGAAGATAATACAATCTGCATATTGTGAAGTTTGCAAAGTTGATTGTAACAGCGACGATATCCTTGCCCAGCATAAACTAGGAAGGAGGCACAAGAAGAACATGGAGAAGCTAAAAGACACAGTTGCCCCTGTGCCTACTGTTGAAGCAAGTTCAGACAATCCAGTAATTGGACCACCAGAAAACCCCAATAAAGGCAAAGCTGTTAGTGGGAAAAAGACCAAGGCGACAGCTGAATCTTTAGAGGATTTGGAGACAAAGAGAAGAAGGATCGTGGAATGTGGGGCTGCAGCAGATGCAGTCAGGACATGTTCAATATGCAATGTGGTGTGCAATAGTGAGACAGTTTTCAATTATCATCTTGCAGGACAAAAGCACGCTGCCATGGTGAAGAAACATGCAGCTGGAAGAGGGGTGGCCACTGCCACATGA | 624 | 0.4696 | MPSDCYQAPSAQSWGAKPIGYAVSLAIPPNGTEQLITANVNSILWTTSTVQARSSGTRKKGAKKMKIIQSAYCEVCKVDCNSDDILAQHKLGRRHKKNMEKLKDTVAPVPTVEASSDNPVIGPPENPNKGKAVSGKKTKATAESLEDLETKRRRIVECGAAADAVRTCSICNVVCNSETVFNYHLAGQKHAAMVKKHAAGRGVATAT* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi14g1937 | 207 | SUPERFAMILY | beta-beta-alpha zinc fingers | 67 | 103 | IPR036236 | - | |
| Vvi14g1937 | 207 | Pfam | Zinc-finger of C2H2 type | 167 | 190 | - | - | |
| Vvi14g1937 | 207 | Pfam | Zinc-finger of C2H2 type | 72 | 95 | - | - | |
| Vvi14g1937 | 207 | SUPERFAMILY | beta-beta-alpha zinc fingers | 165 | 198 | IPR036236 | - | |
| Vvi14g1937 | 207 | SMART | ZnF_U1_5 | 163 | 197 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi14g1937 | 207 | SMART | ZnF_U1_5 | 68 | 102 | IPR003604 | GO:0003676|GO:0008270 | |
| Vvi14g1937 | 207 | Gene3D | Classic Zinc Finger | 56 | 105 | - | - | |
| Vvi14g1937 | 207 | PANTHER | ZINC FINGER PROTEIN 385B-LIKE | 52 | 199 | - | - | |
| Vvi14g1937 | 207 | Gene3D | Classic Zinc Finger | 132 | 198 | - | - | |
| Vvi14g1937 | 207 | MobiDBLite | consensus disorder prediction | 110 | 145 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi14g1937 | Vvi-Chr14 | 30108209 | 30114762 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi14g1937 | 67 | 199 | C2H2 Transcription Factor Family | AT5G61190 | 30.827 | 1.75e-15 | 72.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi14g1937 | - | - | vvi:100262792 | 420.239 |