Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1934 ATGGAAGTGAAAACCTCCAATGAAGCAAAAGAGCTTATGGACTCTTATGTGACATTGGAAGATGAAGGTGATGAATGTTGTGTTGTGGAAGATGTTGAAACTCCCATAGTTTTGGATGACGCCCAGAAGGATGATTCCGCAAGTCTTGACTTTTCTCAATATCTAACAGGCGGAGTTATAGAACCAACACTGGATATGGAGTTCACTTCTGAAGAGGATGCTAGAAATTTTTACAATGCATATGCTAAGCAAATGGGGTTTAGCATTCGTGTGAATTCATATTACCGCTCGAAGAAAGATAACTCAATTATTTCTCGAGAGTTTTGTTGTTCGAAAGAAGGTTTTCGCCGAGAGAAGCGTGCAAAGATGGAGCTAGGTGATGATACAAGGAGGAGGCGTGCTCGGCCGATTACAAGGGAAGGTTGCAAGGCATTGATGACTGTGAGAAGACGGGATAATGGAAGATGGTATGTAGCAAAGTTAGAGAAGGACCATAATCATGAATTAGTGACTCCAGCAATGCGGCAATTTCTTCGCTCCCATAAGCAGGAATATGATCCTAAGAAAGGTTCGGTTAACTCTCTCAGTTCACCTGTGATGGAGATGAGCCCTCCAATGAACACCTTGACTGGTGATTGTGACAGTTTTGGAAAGATGGTGTTCCCTCAACAAGATCATGTTAATTATGTTGGAAGAGGACGGCTAAGCACCTTTGGCATAGATGCTCAAGGTCTCTTGGGGTTTTTTAAGATTATGCAAGTGAGTGATCCTGCATTTTTTTATGCAATACAGGTTGATGAAGAAGATCGGCTAAGTAGTGTTTTCTGGGTTGACACAAGGTCTAGAATTGCTTACAATTGTTTCTCTGATGTAGTAGCCTTTGATACAACTTACCAAGTGAATCAGTATAAAATGCCATTTGCACCTTTTACTGGATTGAATCATCATAAACAGTCAGTTTTATTTGGCTGTGCACTGCTTGCAGATGAGACAGAGTCCACATTCATTTGGCTTTTCACGACTTGGCTTGAATCAATGTCTGGACGGCAACCAGGCTTAATTATAACTGACTATGATTCAGCAATAAGTAGAGCAGTACAACGGGTTTTCTCAGAATCAAATCACCAATATTGCAAGTGGCACATCATGAGCAAAATGCCGAAGGAAATGGGGCATGCATATAGTGCACTACCAAAAACATTTCAAGTGGAGTTTGATAAATGCATTAATAAGAGTGAGACACCTGAAGAATTTGAATCTGCTTGGGAATTGCTCCTGGACAAGTACAATCTTAGAGGAAATGAGTGGCTCCAATCACTATATTTTGATCGCAAGGAGTGGGTCCCTACATACATAAGGGACATATTCTTTGCAGGAATGTATGCTACCCAGAGAAGTGGAAGTGTAAATTCGCTTTTTGACGGCTATGTCAATGCAAGAACTACCTTACAAGATTTTGCAGAGAAATATGAGAAAGCATTGGATGATCGTTATGAAAAAGAAGCGAGGGCAGAGTTTGAAACATTTTACACAAAACCAGTTCTAAAGACACCACTTCCAATGGAAAAACAAGCTGCAGAAGTTTACACAAGAAAAATGTTCACAATATTCCAGGATGAACTTTTTGAGTCTCTTGTCCTTGCTGTGAAATTAACTGGAGCTGATGAAGGAAGCCACACATATGAGGTGGCAAGATTTGATGAAGAACATAAAGTGTACTTTGTTGCTCTTAATGTTTCCAAACAAATAGGTAGTTGTAGTTGCAAGATGTTTGAGTTTGAAGGGATCCTTTGCAGACACATGCTTGCAGTATTCAAAGCAACAAACATTTTTACGCTTCCACCGCATTTTATATTAAAACGATGGACAAGAAGTGCTAAGGATGAGGCTATATTGGATGTAATGCCCTGTGTTGAGATGCAAGGTAATTCTCAAAAAGGCAAGAATTCACAATACAATATTTTGTACCAAGAAGCCATTAAATGTGCAGAGGAAGGGATGGCATCTGACCATAGTTTTAAGGTGGCATTGAGTGCCTTAAGAGAGGCTAGGATCAAAATTATTGGTGCTAAGAATAATGCCATTAGTGCCCCAAAACTTGAAACCATGGCCAGCGCAAGCTACCGGGATGAGAGCAACACAATTGGGAGTCAGGTAGACAGTACGTCAGTACTGATCACTCCCCTCAATCCCCGGAAAACTAAAACAAGAGGATCTTCTACAGATAATAATATATCCAAATATGCATCTGAACTATCATCAAGCAGAACTAGGTTATGCGCTAAATGTAAGTGCCCAGGACATGATAGTCATACTTGCTTGTGGTTGAAGGATTCAGGCCCGAGCTCTAGCTTGGACCATCAGAAAGAGAACTTTGTGTGCACAGACAGTCCATGTGGAATGGGAGACGACATTCCTCTAAAATAA 2427 0.4063 MEVKTSNEAKELMDSYVTLEDEGDECCVVEDVETPIVLDDAQKDDSASLDFSQYLTGGVIEPTLDMEFTSEEDARNFYNAYAKQMGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKRAKMELGDDTRRRRARPITREGCKALMTVRRRDNGRWYVAKLEKDHNHELVTPAMRQFLRSHKQEYDPKKGSVNSLSSPVMEMSPPMNTLTGDCDSFGKMVFPQQDHVNYVGRGRLSTFGIDAQGLLGFFKIMQVSDPAFFYAIQVDEEDRLSSVFWVDTRSRIAYNCFSDVVAFDTTYQVNQYKMPFAPFTGLNHHKQSVLFGCALLADETESTFIWLFTTWLESMSGRQPGLIITDYDSAISRAVQRVFSESNHQYCKWHIMSKMPKEMGHAYSALPKTFQVEFDKCINKSETPEEFESAWELLLDKYNLRGNEWLQSLYFDRKEWVPTYIRDIFFAGMYATQRSGSVNSLFDGYVNARTTLQDFAEKYEKALDDRYEKEARAEFETFYTKPVLKTPLPMEKQAAEVYTRKMFTIFQDELFESLVLAVKLTGADEGSHTYEVARFDEEHKVYFVALNVSKQIGSCSCKMFEFEGILCRHMLAVFKATNIFTLPPHFILKRWTRSAKDEAILDVMPCVEMQGNSQKGKNSQYNILYQEAIKCAEEGMASDHSFKVALSALREARIKIIGAKNNAISAPKLETMASASYRDESNTIGSQVDSTSVLITPLNPRKTKTRGSSTDNNISKYASELSSSRTRLCAKCKCPGHDSHTCLWLKDSGPSSSLDHQKENFVCTDSPCGMGDDIPLK* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1934 808 Pfam FAR1 DNA-binding domain 76 170 IPR004330 -
Vvi14g1934 808 ProSiteProfiles Zinc finger SWIM-type profile. 573 609 IPR007527 GO:0008270
Vvi14g1934 808 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 686 IPR031052 GO:0006355
Vvi14g1934 808 SMART 26again6 584 611 IPR006564 GO:0008270
Vvi14g1934 808 Pfam SWIM zinc finger 584 608 IPR007527 GO:0008270
Vvi14g1934 808 Pfam MULE transposase domain 291 385 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1934 Vvi-Chr14 30074927 30077440 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi14g1934 FAR1 1.6e-31 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1934 - - vvi:100255920 1623.99