Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1922 ATGGACGCTCCACCCAACTTCCAAATCTCCCTTCCAAGGTGGATTGGAATATTCCGGCGCCGGAAAGCAAACTCCGATGAAAACTACGAAGAAGACGACGGCCCCATCTCCAATTCCATTGAATGCTACGCCTGTACTCAGGTGGGAGTGCCGGTGTTCCACTCCACCAGTTGTGACCAGGCCCACCAGCCGGAGTGGGAGGCCTCAGCCGGTTCTTCCTTGATTCCAATTCAGGACAGGAGGACCGGGAAGGCCCGGTCCAACGGCCGCCCCTCGGGGCCTTTCGGGCCGGTCCTGGACCCGAGGACCAAGCCCGTGCAGAGGTGGAACCGCGCGTTCCTACTCGTCCGTGGGATGTCCCTGGCAGTGGATCCCCTCTTCTTTTACGTCATATCCATTGGCGGCGAGGGGGGACCGTGCCTGTACATGGACGGTGGGCTGGCGGCCATCGTGACGGTGCTGCGGACGTGTGTGGACGCTGTGCACTTGTTTCACTTGTGGCTGCAGTTCAGGCTGGCGTACGTGTCTAGGGAGTCTCTGGTGGTGGGTTGTGGTAAACTCGTGTGGGACGCACGTGCCATTGCCTCCCACTACGTCAGGTCTCTCAAAGGCTTCTGGTTCGATCTCTTCGTCATCCTCCCTGTTCCTCAGGTTGTGTTTTGGTTGGTTGTACCGAAATTAATCAAACAAGAGGAGATAAAGCTGATGATGACAATACTTCTGCTGATGTTCTTGTTCCAGTTCCTTCCCAAGGTCTACCATAGTGTTTGCTTGATGAGAAGAATGCAGAAGGTCATGGGTTATATATTTGGCACTATCTGGTGGCGTTTTGTTCTTAATCTCATTGCCTACTTGATTGCTTCTCATGTTGCTGGAGGATGCTGGTATGTTCTTGCAATACAACGGGTAGCATCATGTCTCCGTCAACAGTGTGACAGAAATAGGAAGCCGCTGTGCCTGGATGTCAATGGGCCGTTTGAATATGGGATCTATGACATTGCTCTTCCTGTTATTTCTAGTCAATCCATTGCTGTTAAGATCCTTTATCCCATATTCTGGGGTCTGCTGAACCTCAGCACTTTTGCTAATGAACTTGCACCCACAAGTAACTGGCTAGAAGTGATATTCAGTATATGCATTGTGCTCAGTGGCTTACTGCTCTTTACTTTATTGATCGGAAATATTCAGGTATTTTTACAGTCCGTCATGGCAAAGAAGAGAAAAATGCAGCTGAGATACCGAGAAATAGAATGGTGGATGAGGCGGAGACAGTTGCCATCTCATCTGAGGCAAAGGGTTCGCCGTTTTGAACGCCATAGTTGGGCAGCCATGGGGGGTGAAGATGAGATGGAATTGATCCAGGACTTGCCTGAAGGGCTTAGACGGGACATTAAGCGCCATCTTTGCCTAGATCTTATTAAAAAGGTACCTCTGTTCCAGAGTTTGGATGATCTTATCCTTGACAACATCTGTGACAGGGTTAAGCCCCTGGTCTTCTGCAAAGATGAAAAGATTATTAGAGAAGGAGACCCAGTGCATCGCATGGTGTTCATCACCCGTGGCCATATAAAGAGTAGCCAAAACCTCAGCAAAGGCATGGTGGCCACAAGCCTGCTTGAACCTGGAGACTTTTTAGGCGATGAGCTCCTGTCTTGGTGCATTCGCCGCCCATTCATAGACAGGCATCCAGCCTCATCTGCCACATTTGTTTGTGTGGAATCAACAGAAGCATTCGGTCTAGATGCAAACCATCTGCGGTTCATCACAGAGCACTTCCGCTACAAGTTTGCGAATGAAAGGCTTAAGCGAACAGCAAGATACTACTCATCCAACTGGCGAACATGGGCAGCAGTGAATATACAATTGGCTTGGCGTCGCTACATAATCAGGACCAGGGGAGCTCCAGCCATTCCTGTGATTGAAAATGGAGGTAGTGATCGTCGGCTCAGACAGTGTGCTGCAATGTTCATGTCACTTAGGCCTCATGACCACCTGGAATAA 2001 0.5022 MDAPPNFQISLPRWIGIFRRRKANSDENYEEDDGPISNSIECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLIPIQDRRTGKARSNGRPSGPFGPVLDPRTKPVQRWNRAFLLVRGMSLAVDPLFFYVISIGGEGGPCLYMDGGLAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDLFVILPVPQVVFWLVVPKLIKQEEIKLMMTILLLMFLFQFLPKVYHSVCLMRRMQKVMGYIFGTIWWRFVLNLIAYLIASHVAGGCWYVLAIQRVASCLRQQCDRNRKPLCLDVNGPFEYGIYDIALPVISSQSIAVKILYPIFWGLLNLSTFANELAPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLQSVMAKKRKMQLRYREIEWWMRRRQLPSHLRQRVRRFERHSWAAMGGEDEMELIQDLPEGLRRDIKRHLCLDLIKKVPLFQSLDDLILDNICDRVKPLVFCKDEKIIREGDPVHRMVFITRGHIKSSQNLSKGMVATSLLEPGDFLGDELLSWCIRRPFIDRHPASSATFVCVESTEAFGLDANHLRFITEHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAWRRYIIRTRGAPAIPVIENGGSDRRLRQCAAMFMSLRPHDHLE* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1922 666 CDD CAP_ED 478 588 IPR000595 -
Vvi14g1922 666 Gene3D - 140 403 - -
Vvi14g1922 666 Gene3D Helix hairpin bin 404 469 - -
Vvi14g1922 666 SMART cnmp_10 478 604 IPR000595 -
Vvi14g1922 666 Pfam Cyclic nucleotide-binding domain 498 586 IPR000595 -
Vvi14g1922 666 Pfam Ion transport protein 109 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi14g1922 666 SUPERFAMILY Voltage-gated potassium channels 101 400 - -
Vvi14g1922 666 ProSiteProfiles cAMP/cGMP binding motif profile. 478 588 IPR000595 -
Vvi14g1922 666 SUPERFAMILY cAMP-binding domain-like 405 592 IPR018490 -
Vvi14g1922 666 Gene3D Jelly Rolls 476 594 IPR014710 -
Vvi14g1922 666 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 86 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1922 Vvi-Chr14 29993193 29997682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1922 14 666 Ion Channels AT5G15410 70.531 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1922 K05391 - vvi:100245706 1320.84