Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1921 ATGGGGTTGACATTTTCAGAGCAGGGACCAGGGAGGTTTGCAAGCAACAGTTTGCTCCAATACCAACTGATCAATTATCTGACCAGAACTTTGTACATTCGCAACTTGGTATCCAAGCAGAGGAGGAGAATGCTTGTTGGTGGTTATGATCTTGACATGTCATTCATCACAGGCCGTTTACTGGCCATGTCTTTCCCTGCAGAGCGTATGCAAGCCATATTTCGTAATCCTCTCTGGCAAGTGAAGGATGTGCTGGACATGAGACATAATGGGCATTATAAGGTCTATAATCTCCGTGTCGAAGAAAGTTATGATCCATTGCATTTTCATGGTCGTGTGGAGACGTTTCCATTTGATGACCACCACATTCCACCTCTGCAGACTATCAAGCTCTTTTGCAAAAACGTGCATTCATGGCTATCATCTCATCCAAAGAACATTGCTGTTGTGCACTGCATGGCTGGCAAAGGTAGGACAGGCTTAACGGTATGTGCCTATTTAGTTTACACTGGCATGTCAGCAGAGGAAGCTCTTAAGCTGCATGCAGATAAACGAACCACCAACAATGAAGGAGTGTCAATTCCAAGCCAACGCCGTTATGTGGGGTACTGGGAAAGTTTACTTGCTTTCCACAAGGGGAGTTGA 645 0.4527 MGLTFSEQGPGRFASNSLLQYQLINYLTRTLYIRNLVSKQRRRMLVGGYDLDMSFITGRLLAMSFPAERMQAIFRNPLWQVKDVLDMRHNGHYKVYNLRVEESYDPLHFHGRVETFPFDDHHIPPLQTIKLFCKNVHSWLSSHPKNIAVVHCMAGKGRTGLTVCAYLVYTGMSAEEALKLHADKRTTNNEGVSIPSQRRYVGYWESLLAFHKGS* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1921 214 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 31 209 - -
Vvi14g1921 214 Pfam Tyrosine phosphatase family 140 176 IPR026893 GO:0004721
Vvi14g1921 214 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 208 IPR029021 -
Vvi14g1921 214 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Vvi14g1921 214 ProSiteProfiles Phosphatase tensin-type domain profile. 42 211 IPR029023 -
Vvi14g1921 214 Gene3D Protein tyrosine phosphatase superfamily 29 213 IPR029021 -
Vvi14g1921 214 CDD PTP_PTEN 52 207 IPR045101 GO:0016791
Vvi14g1921 214 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 130 185 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1921 Vvi-Chr14 29985955 29991984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1921 1 212 Protein tyrosine phosphatase (PTP) family AT5G39400 68.075 2.13e-105 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1921 K01110 - vvi:100254134 438.728