Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi14g1919 | ATGGCCACGAAGAAACCCCAATTGTCTCCGGACGAAATTGAGGATATAATTCTGGGGAAAATTTTCTTGGTTTCGTTGAATGATTCCATGGAAAGCGATTCAAGAATTGTATACTTGGAGATGACTGCAGCTGAAATTCTGAGTGAGGGCAGGCCGTTGAAGCTTTCACGGGATTTGATGGAAAGGGTGTTGATCGATCGGCTTTCCGGGCACTTCCCTGGTGCCGAGCCTCCGTTTCCGTACCTAATCGGGTGTTATCGGCGAGCATGTGATGAGGGAAAGAAGATTGCATCGAAGAAAGACAAGAATTTGAGGTCTGAACTGGAATTGGTAGTGAAGCAAGCAAAGAAATTGGCGGTTTCCTATTGCCGGATTCATTTAGGCAATCCGGATATGTTTTCCAATTGGGATTCCGGTGCAAATGATTCGGCAGTGTCGCCACTGTTGCCGTTGATTTTCTCCGAAGTTTCTAGCAGTGTTGATGGATTTGGAGGGAGTAGCATTGGGTGCCCACCTGGGTTCTTGGAGGAGTTTTTCCGGGACTCAGATTTCGATAGTTTGGACCCGATTTTCAAAGGGTTGTACGAGAACTTGAGAAGTATAGTGCTGAAAGTGTCTGCACTGGGGAATTTTCAGCAGCCTTTAAGGGCTTTCTTGTATTTGGTCAGGTTTCCATTTGGTGCCAAATCACTGGTGAGTCACCGATGGTGGATTCCCCAAGGCGCGTATATGAATGGGCGGGTTATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCATGTCAGTGCTTTGCCGGATCGGGGTATTTTCCAGGGTCAGCCTGATGTTGGTCAGCAATGCTTCTCTGAGGCATCTACTCGTCGTCCAGCTGATTTATTGTCTTCATTCACCACTATCAAGACAGTCATGAATGGCTTATATGATGGCTTAGCCGAAGTCCTTCTCTCTCTCCTTAAAAATGCTGATACACGTGAGAGTGTTCTGAAGTATCTTGCAGAGGTGATCAATAAAAACTCATCAAGGGCTCATATACAGGTTGATCCCCTATCTTGTGCAAGTTCAGGCATGTTTGTCAGTCTTAGTGCAGTCATGCTTCGACTCTGTGAGCCATTCTTAGATTTAACAAAAATGGACAAAATTGATCCCAAATATGTATTTTACAGTACCCGATTGGATCTGAGAGGATTGACTGCTCTACATGCATCATCTGAGGAAGTTGCTGAATGGATTAATAAAGATAGTCCTGGGGGAACGGAGGGCTCTAGGCAATATAGTGATGGCGAAAGCCGCTTGCTACAATCTCAAGAAGCCACCAGTTCTGGCAGTAATGCTCATGGACCTTCTTTCCTCCATAATGCCAAGCCAGTGCCAATTTCTAGTGAAAAAGCTAAATACTCATTTATCTGTGAATGCTTCTTTATGACTGCAAGAGTACTGAACTTGGGCCTGCTAAAAGCATTTTCTGACTTTAAGCATCTAGTTCAGGATATTTCAAGATGTGAAGATTCCCTTGCCACGTTGAAGGCCGTGCAGGGACAGGCACCTTCTCCAGAACTAGAGGCGGATATAGCTCGCTTTGAGAAAGAAATTGAGTTGTATTCACAGGAAAAGCTATGTTATGAAGCTCAGATACTCAGGGATGGGACTCTTCTTCAGCACGCACTGTCTTTCTACAGGTTAATGGTGGTTTGGTTGGTTCGCCTCATAGGTGGTTTTAAGATGCCTCTACCATCAACTTGCCCTATGGAATTTGCTTGTATGCCTGAGCATTTTGTGGAAGATGCCATGGAATTGCTTATTTTTGCTTCTCGAATTCCTAAAGCTTTGGATGGGGTCTTGCTGGATGATTTTATGAACTTCATTATCATGTTCATGGCAAGTCCAAATTTTATAAGAAACCCATATCTGAGGGCAAAAATGGTTGAAGTCCTGAACTGCTGGATGCCCCGTAGGAGTGGTTCATCTGCTACAACTACTCTCTTTGAAGGGCACCGATTGTCTCTTGAGTATCTTGTGAGAAATCTGCTGAAGCTTTATGTTGATATTGAGTTCACGGGTTCTCACACACAGTTCTATGACAAGTTTAACATTCGTCATAATATTGCTGAACTTCTAGAATACCTGTGGCAGGTCCCAAGTCACCGTAATGCTTGGAGACAGATTGCTAAAGAAGAAGAAAAGGGTGTCTATCTGAATTTCTTGAACTTCCTGATCAATGATAGCATCTATCTCCTTGATGAGAGTCTTAACAAAATTCTTGAACTCAAAGAGTTGGAAGCTGAGATGTCTAACACTGTGGAATGGGAGCGCAGACCAGCTACAGAGAGGCAGGAGAGAACGCGACTATTCCACTCCCAAGAGAATATTATCCGGATTGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTGGCATTTACCTCGGAGCAGATTACAGTTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAATATGCTTAATTACTTTTTGTTACAACTTGTGGGGCCCCAAAGGAAATCTCTTAGCCTAAAAGACCCCGAAAAGTACGAGTTCCGCCCAAAACAACTACTTAAGCAGATCGTCCACATATATGTTCATCTGGCAAGGGGTGATACACAGAAGATTTTCCCAACTGCAATCTCAAAGGATGGGCGATCTTACAATGAGCAGTTATTTAGTGCTGCTGCAGATGTCCTTAGAAGAATTGGTGAGGATGGAAGGATTATACAAGAATTTTCTGAGCTTGGTGCTAGAGCCAAAGTAGCAGCTTCTGAGGCCATGGACGCCGAAGCTGCCCTTGGAGAGATACCTGATGAATTCCTTGATCCAATTCAATACACATTAATGAAGGACCCAGTGATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTAAGCGATAATACTGACCCATTTAATCGATCCCATCTGACTTCGGATATGCTCATCCCAAACATTGAACTGAAGGCGAGAATAGAAGAATTCATCAGATCTCAAGAATTAAAGAAGCACGCAGAAGGCTTAACCATGCAACAAAGCAAAGCCGCAATGCAAACTACCACAGGTGAAATGACTTTGATTGATTAG | 3114 | 0.4383 | MATKKPQLSPDEIEDIILGKIFLVSLNDSMESDSRIVYLEMTAAEILSEGRPLKLSRDLMERVLIDRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLAVSYCRIHLGNPDMFSNWDSGANDSAVSPLLPLIFSEVSSSVDGFGGSSIGCPPGFLEEFFRDSDFDSLDPIFKGLYENLRSIVLKVSALGNFQQPLRAFLYLVRFPFGAKSLVSHRWWIPQGAYMNGRVIEMTSILGPFFHVSALPDRGIFQGQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNGLYDGLAEVLLSLLKNADTRESVLKYLAEVINKNSSRAHIQVDPLSCASSGMFVSLSAVMLRLCEPFLDLTKMDKIDPKYVFYSTRLDLRGLTALHASSEEVAEWINKDSPGGTEGSRQYSDGESRLLQSQEATSSGSNAHGPSFLHNAKPVPISSEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDSLATLKAVQGQAPSPELEADIARFEKEIELYSQEKLCYEAQILRDGTLLQHALSFYRLMVVWLVRLIGGFKMPLPSTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCWMPRRSGSSATTTLFEGHRLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPATERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVHIYVHLARGDTQKIFPTAISKDGRSYNEQLFSAAADVLRRIGEDGRIIQEFSELGARAKVAASEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTSDMLIPNIELKARIEEFIRSQELKKHAEGLTMQQSKAAMQTTTGEMTLID* | 1038 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi14g1919 | 1037 | FunFam | Ubiquitin conjugation factor e4 a | 937 | 1015 | - | - | |
| Vvi14g1919 | 1037 | Pfam | U-box domain | 938 | 1008 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi14g1919 | 1037 | Pfam | Ubiquitin elongating factor core | 255 | 921 | IPR019474 | GO:0000151|GO:0006511|GO:0016567|GO:0034450 | |
| Vvi14g1919 | 1037 | ProSiteProfiles | U-box domain profile. | 937 | 1011 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi14g1919 | 1037 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 937 | 1016 | IPR013083 | - | |
| Vvi14g1919 | 1037 | PANTHER | UBIQUITINATION FACTOR E4 | 3 | 1013 | IPR045132 | GO:0000151|GO:0030433|GO:0034450 | |
| Vvi14g1919 | 1037 | MobiDBLite | consensus disorder prediction | 410 | 448 | - | - | |
| Vvi14g1919 | 1037 | Coils | Coil | 516 | 543 | - | - | |
| Vvi14g1919 | 1037 | SMART | Ubox_2 | 941 | 1004 | IPR003613 | GO:0004842|GO:0016567 | |
| Vvi14g1919 | 1037 | MobiDBLite | consensus disorder prediction | 416 | 447 | - | - |
Showing 1 to 10 of 12 entries
Functional genes information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi14g1919 | K10597 | - | vvi:100250848 | 2033.07 |
Showing 1 to 1 of 1 entries