Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1919 ATGGCCACGAAGAAACCCCAATTGTCTCCGGACGAAATTGAGGATATAATTCTGGGGAAAATTTTCTTGGTTTCGTTGAATGATTCCATGGAAAGCGATTCAAGAATTGTATACTTGGAGATGACTGCAGCTGAAATTCTGAGTGAGGGCAGGCCGTTGAAGCTTTCACGGGATTTGATGGAAAGGGTGTTGATCGATCGGCTTTCCGGGCACTTCCCTGGTGCCGAGCCTCCGTTTCCGTACCTAATCGGGTGTTATCGGCGAGCATGTGATGAGGGAAAGAAGATTGCATCGAAGAAAGACAAGAATTTGAGGTCTGAACTGGAATTGGTAGTGAAGCAAGCAAAGAAATTGGCGGTTTCCTATTGCCGGATTCATTTAGGCAATCCGGATATGTTTTCCAATTGGGATTCCGGTGCAAATGATTCGGCAGTGTCGCCACTGTTGCCGTTGATTTTCTCCGAAGTTTCTAGCAGTGTTGATGGATTTGGAGGGAGTAGCATTGGGTGCCCACCTGGGTTCTTGGAGGAGTTTTTCCGGGACTCAGATTTCGATAGTTTGGACCCGATTTTCAAAGGGTTGTACGAGAACTTGAGAAGTATAGTGCTGAAAGTGTCTGCACTGGGGAATTTTCAGCAGCCTTTAAGGGCTTTCTTGTATTTGGTCAGGTTTCCATTTGGTGCCAAATCACTGGTGAGTCACCGATGGTGGATTCCCCAAGGCGCGTATATGAATGGGCGGGTTATTGAGATGACCAGCATTTTGGGTCCCTTCTTTCATGTCAGTGCTTTGCCGGATCGGGGTATTTTCCAGGGTCAGCCTGATGTTGGTCAGCAATGCTTCTCTGAGGCATCTACTCGTCGTCCAGCTGATTTATTGTCTTCATTCACCACTATCAAGACAGTCATGAATGGCTTATATGATGGCTTAGCCGAAGTCCTTCTCTCTCTCCTTAAAAATGCTGATACACGTGAGAGTGTTCTGAAGTATCTTGCAGAGGTGATCAATAAAAACTCATCAAGGGCTCATATACAGGTTGATCCCCTATCTTGTGCAAGTTCAGGCATGTTTGTCAGTCTTAGTGCAGTCATGCTTCGACTCTGTGAGCCATTCTTAGATTTAACAAAAATGGACAAAATTGATCCCAAATATGTATTTTACAGTACCCGATTGGATCTGAGAGGATTGACTGCTCTACATGCATCATCTGAGGAAGTTGCTGAATGGATTAATAAAGATAGTCCTGGGGGAACGGAGGGCTCTAGGCAATATAGTGATGGCGAAAGCCGCTTGCTACAATCTCAAGAAGCCACCAGTTCTGGCAGTAATGCTCATGGACCTTCTTTCCTCCATAATGCCAAGCCAGTGCCAATTTCTAGTGAAAAAGCTAAATACTCATTTATCTGTGAATGCTTCTTTATGACTGCAAGAGTACTGAACTTGGGCCTGCTAAAAGCATTTTCTGACTTTAAGCATCTAGTTCAGGATATTTCAAGATGTGAAGATTCCCTTGCCACGTTGAAGGCCGTGCAGGGACAGGCACCTTCTCCAGAACTAGAGGCGGATATAGCTCGCTTTGAGAAAGAAATTGAGTTGTATTCACAGGAAAAGCTATGTTATGAAGCTCAGATACTCAGGGATGGGACTCTTCTTCAGCACGCACTGTCTTTCTACAGGTTAATGGTGGTTTGGTTGGTTCGCCTCATAGGTGGTTTTAAGATGCCTCTACCATCAACTTGCCCTATGGAATTTGCTTGTATGCCTGAGCATTTTGTGGAAGATGCCATGGAATTGCTTATTTTTGCTTCTCGAATTCCTAAAGCTTTGGATGGGGTCTTGCTGGATGATTTTATGAACTTCATTATCATGTTCATGGCAAGTCCAAATTTTATAAGAAACCCATATCTGAGGGCAAAAATGGTTGAAGTCCTGAACTGCTGGATGCCCCGTAGGAGTGGTTCATCTGCTACAACTACTCTCTTTGAAGGGCACCGATTGTCTCTTGAGTATCTTGTGAGAAATCTGCTGAAGCTTTATGTTGATATTGAGTTCACGGGTTCTCACACACAGTTCTATGACAAGTTTAACATTCGTCATAATATTGCTGAACTTCTAGAATACCTGTGGCAGGTCCCAAGTCACCGTAATGCTTGGAGACAGATTGCTAAAGAAGAAGAAAAGGGTGTCTATCTGAATTTCTTGAACTTCCTGATCAATGATAGCATCTATCTCCTTGATGAGAGTCTTAACAAAATTCTTGAACTCAAAGAGTTGGAAGCTGAGATGTCTAACACTGTGGAATGGGAGCGCAGACCAGCTACAGAGAGGCAGGAGAGAACGCGACTATTCCACTCCCAAGAGAATATTATCCGGATTGATATGAAGTTGGCAAATGAAGATGTGAGTATGCTGGCATTTACCTCGGAGCAGATTACAGTTCCTTTCCTACTTCCAGAGATGGTTGAAAGGGTGGCCAATATGCTTAATTACTTTTTGTTACAACTTGTGGGGCCCCAAAGGAAATCTCTTAGCCTAAAAGACCCCGAAAAGTACGAGTTCCGCCCAAAACAACTACTTAAGCAGATCGTCCACATATATGTTCATCTGGCAAGGGGTGATACACAGAAGATTTTCCCAACTGCAATCTCAAAGGATGGGCGATCTTACAATGAGCAGTTATTTAGTGCTGCTGCAGATGTCCTTAGAAGAATTGGTGAGGATGGAAGGATTATACAAGAATTTTCTGAGCTTGGTGCTAGAGCCAAAGTAGCAGCTTCTGAGGCCATGGACGCCGAAGCTGCCCTTGGAGAGATACCTGATGAATTCCTTGATCCAATTCAATACACATTAATGAAGGACCCAGTGATCTTACCTTCTTCAAGAATCACAGTAGACCGGCCTGTCATTCAAAGGCATCTTCTAAGCGATAATACTGACCCATTTAATCGATCCCATCTGACTTCGGATATGCTCATCCCAAACATTGAACTGAAGGCGAGAATAGAAGAATTCATCAGATCTCAAGAATTAAAGAAGCACGCAGAAGGCTTAACCATGCAACAAAGCAAAGCCGCAATGCAAACTACCACAGGTGAAATGACTTTGATTGATTAG 3114 0.4383 MATKKPQLSPDEIEDIILGKIFLVSLNDSMESDSRIVYLEMTAAEILSEGRPLKLSRDLMERVLIDRLSGHFPGAEPPFPYLIGCYRRACDEGKKIASKKDKNLRSELELVVKQAKKLAVSYCRIHLGNPDMFSNWDSGANDSAVSPLLPLIFSEVSSSVDGFGGSSIGCPPGFLEEFFRDSDFDSLDPIFKGLYENLRSIVLKVSALGNFQQPLRAFLYLVRFPFGAKSLVSHRWWIPQGAYMNGRVIEMTSILGPFFHVSALPDRGIFQGQPDVGQQCFSEASTRRPADLLSSFTTIKTVMNGLYDGLAEVLLSLLKNADTRESVLKYLAEVINKNSSRAHIQVDPLSCASSGMFVSLSAVMLRLCEPFLDLTKMDKIDPKYVFYSTRLDLRGLTALHASSEEVAEWINKDSPGGTEGSRQYSDGESRLLQSQEATSSGSNAHGPSFLHNAKPVPISSEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDSLATLKAVQGQAPSPELEADIARFEKEIELYSQEKLCYEAQILRDGTLLQHALSFYRLMVVWLVRLIGGFKMPLPSTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPNFIRNPYLRAKMVEVLNCWMPRRSGSSATTTLFEGHRLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPATERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITVPFLLPEMVERVANMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVHIYVHLARGDTQKIFPTAISKDGRSYNEQLFSAAADVLRRIGEDGRIIQEFSELGARAKVAASEAMDAEAALGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTSDMLIPNIELKARIEEFIRSQELKKHAEGLTMQQSKAAMQTTTGEMTLID* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1919 1037 FunFam Ubiquitin conjugation factor e4 a 937 1015 - -
Vvi14g1919 1037 Pfam U-box domain 938 1008 IPR003613 GO:0004842|GO:0016567
Vvi14g1919 1037 Pfam Ubiquitin elongating factor core 255 921 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Vvi14g1919 1037 ProSiteProfiles U-box domain profile. 937 1011 IPR003613 GO:0004842|GO:0016567
Vvi14g1919 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 937 1016 IPR013083 -
Vvi14g1919 1037 PANTHER UBIQUITINATION FACTOR E4 3 1013 IPR045132 GO:0000151|GO:0030433|GO:0034450
Vvi14g1919 1037 MobiDBLite consensus disorder prediction 410 448 - -
Vvi14g1919 1037 Coils Coil 516 543 - -
Vvi14g1919 1037 SMART Ubox_2 941 1004 IPR003613 GO:0004842|GO:0016567
Vvi14g1919 1037 MobiDBLite consensus disorder prediction 416 447 - -
Vvi14g1919 1037 SUPERFAMILY RING/U-box 930 1008 - -
Vvi14g1919 1037 CDD RING-Ubox_UBE4A 940 1008 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1919 1 1037 U-box Gene Family AT5G15400 78.095 0.0 1644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1919 K10597 - vvi:100250848 2033.07