Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1908 ATGGCTCAGAATGATACGTCCTCGTTTTCATCCAAAGTGGTGGCGCCCTCCCGCCCCACCATTGCTCTTCCCCCTCGCTCCTCCATGGACGCTTTCTTCTTCGCCGCCACCAGTCCCGGCCCTATGACCCTCGTCTCCAGCTTCTTCTCCGACAATTACCCCGACTCCGACTGCCGCTCCTTCTCTCAGCTCCTCGCCGGCGCCATGGCTTCCCCAGGCGCCAGGCCCACTTTGCTCTCCGGTAATTCCACCAACCACGAGGGTTCTGGAGACGGAGCTGAGAAGAGCAGTTTAGGGTTCAGGCAGAACCGCCCCTTGAGTTTGGCGGTTGCTCGGTCGCCGATGTTTTCCATTCCGCCTGGGTTGAGCCCTTCAGGACTGCTCAATTCGCCGGGCTTCTTTTCTCCCCTCCAGAGCCCGTTTGGGATGTCCCATCAGCAAGCCTTGGCACAAGTTACAGCCCAGGCTGCATTATCCCAGTCTCATATGTTCATTCAAGCAGAGTATCAACCTTCTTCATTGGAAGCTCCTGTGGAATCACTGGCACAAGATCCATCCTTTATCACCGATGCAACTACACACCAGCAGGTGCCACCACTACCATCAGACCCTAAGAGTTCCATGACGGAGTCATCAGAAGTCTCTCATTCTGACAGGAAATCCCAACCTCCCTCTCTTGTTGTTGATAAGCCGGGTGATGATGGCTACAACTGGCGGAAATATGGACAGAAGCAGGTCAAAGGGAGTGAGTATCCTCGAAGCTACTACAAATGTACACATCTGAATTGCCCTGTCAAGAAAAAAGTTGAGCGTTCTCATGATGGTCAAATAACTGAGATTATCTATAAAGGGCAGCACAACCATGAAGTGCCAAAACCTAATAAGCGTGCAAAGGATGGCAATGATCTAAATGGACATGCAAACTCTCAGTCTAAGCCTGAACTTGGTTCTCAAGGTCAGATGGGAAGTTTAAACAGGCCAAATGAAACTGTACCTGCTAATTCAGTGCCTGGGATGGATCAGGAAACTACCCAAGCAATGCCTTTGCAGGTAAATGGGTCCAGTGACAGTGAGGAAGTGGGTGATGCTGAAACTAGAGTAAAAGAGGATGATGATGATGATGAACCAAATCCCAAGAGAAGGAACACAGAGGTTGCAGCACCTGCTGAGGTAGTATCATCACACAAGACAGTCACTGAACCAAGGATCATTGTGCAGACAAGAAGTGAAGTTGATCTTTTGGATGATGGCTACAGGTGGCGCAAGTATGGGCAAAAAGTGGTCAAAGGGAATCCTCATCCAAGGAGCTATTACAAATGCACTAGCCTGGGCTGTAATGTACGTAAACATGTTGAGAGGGCTTCAACAGATCCTAAAGCTGTGATAACAACATATGAGGGGAAACACAATCATGATGTCCCAGCAGCTAGAAACAGCAGCCACAACACTGCCAACAGTAATGCAACACAGCTAAAACAGCATAATGTGGTGGCTGAGAAGCGTGCCTTACTCAAAGAGATGGGTTTCAGAAACAAGGATAAAAAACCTGTTGCACTTTTACAACTGAAAGAAGAGCAGATTGCGGTGTAA 1590 0.4918 MAQNDTSSFSSKVVAPSRPTIALPPRSSMDAFFFAATSPGPMTLVSSFFSDNYPDSDCRSFSQLLAGAMASPGARPTLLSGNSTNHEGSGDGAEKSSLGFRQNRPLSLAVARSPMFSIPPGLSPSGLLNSPGFFSPLQSPFGMSHQQALAQVTAQAALSQSHMFIQAEYQPSSLEAPVESLAQDPSFITDATTHQQVPPLPSDPKSSMTESSEVSHSDRKSQPPSLVVDKPGDDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSHDGQITEIIYKGQHNHEVPKPNKRAKDGNDLNGHANSQSKPELGSQGQMGSLNRPNETVPANSVPGMDQETTQAMPLQVNGSSDSEEVGDAETRVKEDDDDDEPNPKRRNTEVAAPAEVVSSHKTVTEPRIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSLGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANSNATQLKQHNVVAEKRALLKEMGFRNKDKKPVALLQLKEEQIAV* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1908 529 MobiDBLite consensus disorder prediction 471 492 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 192 249 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 1 15 - -
Vvi14g1908 529 ProSiteProfiles WRKY domain profile. 409 474 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 MobiDBLite consensus disorder prediction 262 394 - -
Vvi14g1908 529 SMART WRKY_cls 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 SMART WRKY_cls 414 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 MobiDBLite consensus disorder prediction 476 492 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 76 91 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 303 358 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 1 21 - -
Vvi14g1908 529 FunFam WRKY transcription factor 218 292 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 192 211 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 285 302 - -
Vvi14g1908 529 SUPERFAMILY WRKY DNA-binding domain 406 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 131 494 IPR044810 GO:0003700
Vvi14g1908 529 Gene3D WRKY domain 399 475 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 Gene3D WRKY domain 225 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 SUPERFAMILY WRKY DNA-binding domain 231 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 FunFam WRKY transcription factor 33 401 467 - -
Vvi14g1908 529 MobiDBLite consensus disorder prediction 74 99 - -
Vvi14g1908 529 ProSiteProfiles WRKY domain profile. 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 MobiDBLite consensus disorder prediction 263 277 - -
Vvi14g1908 529 Pfam WRKY DNA -binding domain 415 471 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi14g1908 529 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1908 Vvi-Chr14 29916881 29920251 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1908 17 528 WRKY Transcription Factor Family AT2G03340 53.903 6.55e-157 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi14g1908 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1908 - - vvi:104881701 1042.34