Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1907 ATGGGTTGCATTAGCTCGAAGCACGCGGTGTCCGCATCTCCAGATTTCGATATCTCGGAGGCCATTGAGGATGATTGGTCGGTGATTTCCGCTTCCTCGTTCAAGCAGCGACGTGGGTCTAGAGGGGCATCCGTCAAGAAGGCGAAGAAGGTGAGGAAGGAGAGGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAAGAGAAGGACAAGGACAAGGAATCTGAGGAGGAGAAGGAGGAGGAGGAGCCGAAAGACAATGAGGGTCTCGAATTGCAGAGGTCCAAGAAGGGGAGCGTTAATGGGAAGAGTACTTTCAGTGTAAGGTTTGGGAATTTGCATAAGGTAGAAGCCGAGCAAATCATCGCCGGATGGCCCTCTTGGCTTAGCGCTGCTGCCGGAGAGGCCATTCATGGATGGCTGCCTCTCAGAGCAGACTCATTCGAGAAATTGGAGAAGATTGGACAAGGTACATACAGCACCGTGTATCGAGCACGTGATGTTGAAACTGGGAGGATTGTTGCCCTGAAGAAAGTGCGTTTTGACAATTTTCAACCAGAGAGTGTCATGTTTATGTCACGAGAAATAACCATTCTCCGCAGGCTTGACCATCGAAATATCATGAAATTGGAGGGGATAATTACTTCTCGATTGTCATGTAGCATATACCTTGTGTTTGAATACATGGAACATGACCTTGCTGGATTAGTATCTTGTCCTGACATCAAGTTCAGTGTTGCACAGGTCAAGTGCTATATGCAGCAGCTATTATCTGCAATTGAGCACTGCCACTTACTAGGTGTAATGCACCGAGATATCAAAGCATCCAATATTTTGGTAAACAATGAAGGAGTTCTGAAGCTGGCAGATTTTGGACTCGCAAATATTCTTAGGCCAAAGCACAAGCAAATACTAACCAGTCGTGTGGTGACTTTATGGTATCGCCCTCCAGAACTTATACTAGGGTCAACGAGTTATGGAGTATCTGTAGACCTATGGAGTGTGGGCTGTGTATTTGCAGAACTTCTCATTGGGAAGCCTCTTTTCAAGGGGAGAACGGAGGTTGAACAATTACACAAAATCTTCAAGCTTTGTGGTTCTCCACCTGATGAGTACTGGAAGAAGTCTAAATTTCCTCATGCAACTATGTTCAAGCCTCATCATTCTTATGAAAGTACTCTTCGGGAGAGGTTCAGAGAATACCCAACGACTGCACTGAACTTAATAGAAACTCTTCTTTCTGTAGAACCTCCCAAGCGCGGGACTGCCTCCTCTGCCCTTATATCCGAGTATTTCAACACGAAACCTTATGCATGTGAACCGTCAAGCTTGCCGAAGTACCCACCAAACAAAGAAATTGATGCAAAATGTCGGGAGGAAGCACGGAGGAAAACTGGGGGTGTTGGAGTGCGAGGGTCTGGAGCGTTAAGGAAGCCCAGAAGATCCCGTACATCTTCGCAGGAACCAAATAGTACCAGTAAATTTGCAGTAACAGAGGTTCTCTCTCACTCACTCACAATCATACCTGCAGCTATTATATAG 1536 0.4642 MGCISSKHAVSASPDFDISEAIEDDWSVISASSFKQRRGSRGASVKKAKKVRKERKEEKEEKEEKEKDKDKESEEEKEEEEPKDNEGLELQRSKKGSVNGKSTFSVRFGNLHKVEAEQIIAGWPSWLSAAAGEAIHGWLPLRADSFEKLEKIGQGTYSTVYRARDVETGRIVALKKVRFDNFQPESVMFMSREITILRRLDHRNIMKLEGIITSRLSCSIYLVFEYMEHDLAGLVSCPDIKFSVAQVKCYMQQLLSAIEHCHLLGVMHRDIKASNILVNNEGVLKLADFGLANILRPKHKQILTSRVVTLWYRPPELILGSTSYGVSVDLWSVGCVFAELLIGKPLFKGRTEVEQLHKIFKLCGSPPDEYWKKSKFPHATMFKPHHSYESTLRERFREYPTTALNLIETLLSVEPPKRGTASSALISEYFNTKPYACEPSSLPKYPPNKEIDAKCREEARRKTGGVGVRGSGALRKPRRSRTSSQEPNSTSKFAVTEVLSHSLTIIPAAII* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1907 511 Coils Coil 45 80 - -
Vvi14g1907 511 PANTHER CELL DIVISION PROTEIN KINASE 144 434 - -
Vvi14g1907 511 FunFam probable serine/threonine-protein kinase At1g54610 229 468 - -
Vvi14g1907 511 MobiDBLite consensus disorder prediction 458 491 - -
Vvi14g1907 511 MobiDBLite consensus disorder prediction 51 72 - -
Vvi14g1907 511 Pfam Protein kinase domain 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1907 511 ProSiteProfiles Protein kinase domain profile. 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1907 511 Gene3D Transferase(Phosphotransferase) domain 1 229 468 - -
Vvi14g1907 511 MobiDBLite consensus disorder prediction 31 98 - -
Vvi14g1907 511 SUPERFAMILY Protein kinase-like (PK-like) 140 435 IPR011009 -
Vvi14g1907 511 SMART serkin_6 146 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1907 511 CDD STKc_CDK9_like 146 430 - -
Vvi14g1907 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Vvi14g1907 511 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Vvi14g1907 511 FunFam probable serine/threonine-protein kinase At1g54610 133 228 - -
Vvi14g1907 511 Gene3D Phosphorylase Kinase; domain 1 134 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1907 Vvi-Chr14 29911249 29915076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1907 138 463 Core Cell Cycle Gene Families AT5G10270 48.094 3.77e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi14g1907 Pkinase 1.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1907 - - vvi:100268091 914.45