Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1904 ATGGGCTGCCTTGGGGAAATGGATGGACCAACTGGGCGGGGTGGTGGTGGTGTGGATATGTTCTTATCAAACTATAAGCTGGGGAAAACCCTTGGCATTGGTTCATTTGGTAAGGTTAAAATTGCAGAACATGCATTAACTGGACACAAAGTTGCTATCAAGATCCTTAACCGTCGGAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATATTGAGATTGTTCATGCACCCTCACATCATTCGACTTTATGAGGTTATAGAGACACCCAGTGATATTTTTGTCGTGATGGAGTATGTGAAGTCTGGAGAGCTTTTTGATTACATTGTAGAGAAGGGCAGGCTACAGGAGGAAGAAGCTCGTAACTTTTTTCAACAGATAATTTCTGGCGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTTAAACCTGAGAACTTGCTTTTGGATTCCAAATGCAATGTGAAGATTGCTGATTTTGGTTTAAGTAATATCATGAGAGATGGTCATTTTTTGAAGACAAGTTGTGGAAGCCCAAATTATGCTGCCCCAGAGGTTATATCTGGAAGATTGTACGCAGGACCTGAGGTGGATGTATGGAGCTGCGGTGTTATTTTGTACGCTCTTCTTTGTGGTACTCTTCCATTTGATGATGAAAACATTCCCAACCTTTTCAAGAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATTTATCAACTGGTGCTAGAGATCTGATCCCAAGGATGCTCATAGTTGACCCTATGAAGCGAATGACAATTCCTGAGATTCGTCAGCACCCATGGTTCCAAGCTCATCTTCCTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATGCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAGGAATCTTTGGAATATCAATTCAATCGTAGTGAAGCTGGAGCTGTTGGGCAGCGGTTTCCAGGATATGTGGATTATCAAGGAATGGGTTTAAGAACCCAGTTCCCAGCTGAGAGGAAATGGGCTCTTGGGCTTCAGTCTCGAGCCCAGCCTAGACAGATAATGACTGAAGTTCTCAAAGCTCTACAAGAACTGAATGTGTGTTGGAAAAAGATTGGGCATTACAACATGAAATGCAGGTGGATTCCAGGCATTCCTGGGCATCATGAAGGCATGGTTAACAATCCTGTGCACAGTAATCATTTCTTTGGGGATGAACCAGCAATTGTTGAGAATGATGGTGTTTCCAGGAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGAGAGGAGAAGTATCTGCTTGATCTGCAGAGAGTTCAGGGCCCACAATTCCTCTTCTTGGATCTTTGTGCAGCTTTCCTTGCTCAGCTCCGGGTCCTCTAA 1545 0.4291 MGCLGEMDGPTGRGGGGVDMFLSNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIFVVMEYVKSGELFDYIVEKGRLQEEEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGRLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSTGARDLIPRMLIVDPMKRMTIPEIRQHPWFQAHLPRYLAVPPPDTIQQAKKIDEEILQEVVKMGFDRNLLVESLRNRVQNDATVAYYLLLDNRFRVSSGYLGAEFQESLEYQFNRSEAGAVGQRFPGYVDYQGMGLRTQFPAERKWALGLQSRAQPRQIMTEVLKALQELNVCWKKIGHYNMKCRWIPGIPGHHEGMVNNPVHSNHFFGDEPAIVENDGVSRNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1904 514 SMART uba_6 300 337 IPR015940 -
Vvi14g1904 514 Gene3D Kinase associated domain 1, KA1 396 512 - -
Vvi14g1904 514 Pfam UBA/TS-N domain 299 335 IPR015940 -
Vvi14g1904 514 CDD UBA_SnRK1_plant 299 339 - -
Vvi14g1904 514 Pfam Protein kinase domain 25 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1904 514 PANTHER SERINE/THREONINE KINASE 24 342 - -
Vvi14g1904 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vvi14g1904 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
Vvi14g1904 514 Pfam Kinase associated domain 1 471 513 IPR001772 -
Vvi14g1904 514 SMART serkin_6 25 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1904 514 Gene3D Transferase(Phosphotransferase) domain 1 17 355 - -
Vvi14g1904 514 FunFam Non-specific serine/threonine protein kinase 18 104 - -
Vvi14g1904 514 SUPERFAMILY UBA-like 298 341 IPR009060 GO:0005515
Vvi14g1904 514 CDD STKc_AMPK_alpha 22 277 - -
Vvi14g1904 514 SUPERFAMILY Protein kinase-like (PK-like) 21 293 IPR011009 -
Vvi14g1904 514 ProSiteProfiles Protein kinase domain profile. 25 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1904 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 298 338 IPR015940 -
Vvi14g1904 514 FunFam Non-specific serine/threonine protein kinase 396 512 - -
Vvi14g1904 514 CDD AMPKA_C 390 511 - -
Vvi14g1904 514 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vvi14g1904 514 FunFam Non-specific serine/threonine protein kinase 16 355 - -
Vvi14g1904 514 SUPERFAMILY KA1-like 334 513 IPR028375 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1904 Vvi-Chr14 29856951 29866389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1904 22 278 CBL-interacting serine-threonine protein kinases AT2G26980 51.923 2.66e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vvi14g1904 Pkinase 6.1e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1904 K07198 - vvi:100254223 1021.54