Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1903 ATGGCTAGGAAGAGAAAGGCTGGTGAGTGTGTAGAAGAGAAAATTCCTAGTGAAGGGAACATGGCTTGGGATGAGATGGTGAAGGAAGCTGCTGCAGCAGCAGCTCTTGGAGGAGCTCGGCGAGCTAGGAAGAGATTTGTAGGAGTCCGTCAAAGGCCATCAGGGCGATGGGTGGCTGAGATTAAGGATACCATACAGAAGATAAGGGTGTGGCTGGGCACTTTTGACACAGCTGAGGAAGCGGCGAGGGCCTATGACGAGGCTGCTTGCTTGCTTCGCGGTGCAAATACTCGCACAAACTTCTGGCCTTGTTCTCCCTCGTCCTCTTCAACCCCAGCCCTTCCTTCAAAAATCACAAACCTCCTTCTCCATAGGCTCAAAACAAGAAGCAATGCTTCTGCTTCATCTGCTTCTGTGCCCATCAACCACGAACAAAAGCAACTAGAAGAATATAGGGAAGAAGTCACAGATTTTTCAGACACCCAATTCACTGATTTCCTCAATGATCCTGAGGATTATGTAACATGCAACAATATCATTGCTGATGCTAGTCCAAGTGCCAGCGAATACATGACCATAAGTCCTGACCCGAGTTTCACAAAGGAAAGTTGCGGAAGTAAAGAACCAGACTTGGATTGTAACTGGACTGATGTAGTAGAGTCTTCTAGTGGTGATGGTACTTTTGCAGCCATGAAGAGGATGGTATATGAAAGGAAGTTCTCAGCTTCTCTTTATGCCTTCAATGGGATACCTGAGTGCTTAAAGTTGAAGCTGGGATCTGGAAATGTGAATGGGAAGTCAGGGATGTCTGATCAATTGACTAAACTCCAAGATGCATGTAACAAGAACCAAGAGAAGGACGAAAACAACAATGATGGAGAATTGTCACTTTGGAGCTCTCTTGATCTCCCACCCATCTGCTTTGTCAATTAG 933 0.462 MARKRKAGECVEEKIPSEGNMAWDEMVKEAAAAAALGGARRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSPSSSSTPALPSKITNLLLHRLKTRSNASASSASVPINHEQKQLEEYREEVTDFSDTQFTDFLNDPEDYVTCNNIIADASPSASEYMTISPDPSFTKESCGSKEPDLDCNWTDVVESSSGDGTFAAMKRMVYERKFSASLYAFNGIPECLKLKLGSGNVNGKSGMSDQLTKLQDACNKNQEKDENNNDGELSLWSSLDLPPICFVN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1903 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 241 - -
Vvi14g1903 310 FunFam ethylene-responsive transcription factor RAP2-11 44 103 - -
Vvi14g1903 310 Coils Coil 141 161 - -
Vvi14g1903 310 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Vvi14g1903 310 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Vvi14g1903 310 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Vvi14g1903 310 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Vvi14g1903 310 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Vvi14g1903 310 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vvi14g1903 310 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Vvi14g1903 310 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1903 Vvi-Chr14 29853967 29855166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1903 43 122 AP2-EREBP Transcription Factor Family AT5G19790 73.750 5.28e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi14g1903 AP2 5.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1903 K09286 - vvi:100259331 433.335