Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1887 ATGGAAAAGGCTCCTGACCAGAGTAAGGATGATGAGATGATGGAACTGCCTCCTGGGTTCCGATTCCATCCTACGGATGAGGAGCTCATCACTCACTACCTGTCCCAAAAGGTTCTGAATAGCGGTTTCTGCGCTGTAGCCATCGGAGAGGTGGATTTGAACAAGTGTGAACCCTGGGATTTGCCATGGAAAGCAAAAATGGGTGAGAAAGAATGGTACTTCTTCTGTGTTAGAGACAGAAAATATCCCACTGGTTTGAGGACAAACAGGGCAACCGATGCCGGTTATTGGAAGGCCACAGGCAAAGATAAGGAGATTTACAAGATGAAAACATTGGTGGGGATGAAGAAAACCTTGGTTTTCTACAAAGGAAGAGCCCCTAAAGGTGAAAAGACCAACTGGGTCATGCATGAATACAGATTAGAAGGGAAACATTCCATGTACAATCTCCCTAAAACAACCAAGAATGAGTGGGTGATCTGCAGGGTCTTCCAGAAGAGCTCAGGTGGGAAGAAAACACATATTTCAGGGCTGGTGAGAATGGACCCTTACGGCGATGAATTACGCTCTTCTTCACAGCTGCCTCCATTGACAGACTCTTCTCCGTTCAGCAGCGAAACGAGAACAGTCGGTGACTCGTCTCACGTGACCTGCTTCTCCAACCAAATGGAGGACAGAAAGCCCCAGGAGGACATGATTGACAGCTTCAACAACCCTCTCTTAGCTGCCTCTTCTTCCTCCTCAAACCCCTCTGATATCTCCCCGGCTTCACTGCTTTTCTCCAAATTCCCCTTCCCAAACTCATTCCACACTCCCCAAAATCCACTAAACCTTGGAAACTGTCAATTCCCAGACTCCTTTCTCATCCCTGACCAGTCCATACTGAGGATTCTCCTTGAAAACCAGGGATCCGACATGAAACCATCCTCGAAAACAGAGTTCTCACAGGAAACAGGGCTGAGTACTGATATCAACACTGATATCTCTTCAGTTGTATCAACCCATGAAATGGTTCAAAGGTCTTTCGAAGATCAAAATGATCCATCCACTTCAGCTGGGCCTGTAGACATTGATTGCCTCTGGAATTACTGA 1092 0.4679 MEKAPDQSKDDEMMELPPGFRFHPTDEELITHYLSQKVLNSGFCAVAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDKEIYKMKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKHSMYNLPKTTKNEWVICRVFQKSSGGKKTHISGLVRMDPYGDELRSSSQLPPLTDSSPFSSETRTVGDSSHVTCFSNQMEDRKPQEDMIDSFNNPLLAASSSSSNPSDISPASLLFSKFPFPNSFHTPQNPLNLGNCQFPDSFLIPDQSILRILLENQGSDMKPSSKTEFSQETGLSTDINTDISSVVSTHEMVQRSFEDQNDPSTSAGPVDIDCLWNY* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1887 363 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Vvi14g1887 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 246 - -
Vvi14g1887 363 MobiDBLite consensus disorder prediction 191 209 - -
Vvi14g1887 363 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Vvi14g1887 363 FunFam NAC domain-containing protein 100-like 25 170 - -
Vvi14g1887 363 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vvi14g1887 363 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Vvi14g1887 363 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1887 Vvi-Chr14 29706091 29707418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1887 14 363 NAC Transcription Factor Family AT5G07680 58.405 3.92e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi14g1887 NAM 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1887 - - vvi:100250998 744.191