Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1882 ATGGCTCTTCTCGGGTTTCTGTTGGTGGGCATTCTCTCAATGGTCTCAGCTGTGAATGGGTATTATGGTGGTTGGATTAATGCTCATGCCACCTTCTATGGAGGTGGTGATGCTTCTGGGACAATGGGTGGAGCTTGTGGATATGGAAACCTGTACAGCCAGGGGTATGGGACCAACACTGCAGCATTGAGCACAGCTCTTTTCAACAATGGCCTCAGCTGTGGCGCCTGTTTTGAGCTTAGGTGTGTGAATGATCCCCAGTGGTGCCTCCCTGGCACCATTGTCGTCACTGCCACTAACTTCTGCCCACCAGGAGGCTGGTGTGATCCTCCCCAGCAACACTTTGATCTCTCTCAGCCTGTCTTCCAACACATTGCTCAGTACAGAGCTGGGATTGTCCCTGTCGCTTACAGAAGGGTTTCCTGCAGAAAATCAGGAGGCATCAGGTTCACCGTCAATGGCCATTCCTACTTCAATCTTGTCCTCGTCACCAACGTGGGGGGCGCCGGCGATGTCCATGCTGTTTCCATCAAGGGTTCAAGAACTGCCTGGCAGCCTATGTCAAGGAACTGGGGCCAAAACTGGCAAAGCAACTCCTACCTCAATGGCCAAAGCCTCTCCTTCAGAGTAGTCACCAGCGATGGCCGCGCCATAGTCTCCTACAATGTTGCCCCTGCAGGCTGGTCCTTTGGCCAGACCTACACTGGAGGCCAATTCCGCTAG 723 0.5353 MALLGFLLVGILSMVSAVNGYYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPQQHFDLSQPVFQHIAQYRAGIVPVAYRRVSCRKSGGIRFTVNGHSYFNLVLVTNVGGAGDVHAVSIKGSRTAWQPMSRNWGQNWQSNSYLNGQSLSFRVVTSDGRAIVSYNVAPAGWSFGQTYTGGQFR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Vvi14g1882 240 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Vvi14g1882 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Vvi14g1882 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Vvi14g1882 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Vvi14g1882 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Vvi14g1882 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Vvi14g1882 240 SUPERFAMILY PHL pollen allergen 144 236 IPR036749 -
Vvi14g1882 240 SMART dpbb_1 60 137 IPR007112 -
Vvi14g1882 240 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Vvi14g1882 240 FunFam Expansin 147 239 - -
Vvi14g1882 240 Pfam Lytic transglycolase 60 137 IPR009009 -
Vvi14g1882 240 PANTHER EXPANSIN-A15 8 239 IPR002963 GO:0009664
Vvi14g1882 240 Gene3D - 10 143 IPR036908 -
Vvi14g1882 240 Gene3D - 146 239 IPR036749 -
Vvi14g1882 240 CDD DPBB_EXPA_N 24 142 - -
Vvi14g1882 240 FunFam Expansin 15 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1882 Vvi-Chr14 29649689 29650636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1882 1 240 Expansin Gene Family AT1G26770 77.510 1.04e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1882 - K20628 vvi:100244103 504.212