Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1881 ATGGAGGTGCCACTTGCTTTTCAGGTGTGTGAGCCACACTTTCTTGTGGGTGTAATGGGTGTGGGGATCACGTACTTTGAGGTGGTTCTGATGTTGCAGCCCTCAGATGGAGTCAAAATAGAGGTCAGGGCCAGTCAGGGTGGTGAAGAAGTGAAGGGCAGAGAAGAGAAAAGAGGAGAAGGAAGCGTAGTCGTGTGGGTTTCTGTTAAAAAACCAACACTAGTGCTAGCTGCTTCTAAGTTAGACAGCACCTTCTGTCACCAAGAAAACGATGGCATGGCTAAACAATGTCATATTTACAAGCCTTTCTCTCCCTCTTCATCAATGGGAGTGTTTGAGGACATGGGTTCTCTCTCCATTAGCCCAAGCTACGGAGCTTACTGTTGTAAGAGTTCTGATCAGAGGGGGCTGCACATGGGTTTTCCATTAATGGGGAACTGCAGCAGTAGTTTGGATGACACCCAGAACAGTGAGGGTGGTGGTGGAGATGGCAAGGGGTCTGAAACCAGTGATGGGTTTGGGGAAAACAGTGGCGTTGCCATGGAAATCATCAACAAGGGCATCAACTTAAATGAAGAGAGACCAAATGAGAGCTCTGGATTAGATGGTGGCCAGTCAAAGCTATGTGCCAGAGGGCATTGGAGGCCTGCAGAAGACTCTAAACTCAGAGAACTTGTTGCTCTTTATGGCCCACAGAACTGGAACCTTATAGCAGAGAAGTTGGAAGGAAGATCAGGTAAGAGCTGCAGATTAAGATGGTTTAACCAGTTGGACCCAAGAATCAATAGAAGAGCTTTCACTGAGGAAGAAGAAGAGAGGCTAATGGCAGCTCATAGATGGTATGGTAACAAATGGGCCATGATTGCTAGACTCTTCCCAGGAAGGACTGATAATGCAGTAAAAAATCACTGGCATGTTATAATGGCAAGGAAATACAGAGAGCAGTCTAGTGCTTATAGGAGGAGAAAGATGAATCAAGCTGCTCACAAAAAGTTGGAGGTGGGTGGTGGGAGCTATGTGTGCAGAGATACATCCATTAGAACTGAACACAACTCTCTCAATGTCTGCAATGGCAACAACTTCATCAAATCTTCTCACCACTTCCCATTTGCAGCTCATATGGGTGGTGGTGGGTCTATTATCAATGGCTCCCACATGACCAGTAGTGAAGAAGCAGTGTCAAGTGGTGGTGGTGATTGGTTGGTGGGTGCTTCTTCAAGCAGCAACACTATGTTGCCTCCTCACCACACTGGACCTTGTCCAAGCCAGACACCTTTTCATTTCCTTTCTGACTCTGTTGCATCAACATCACAAGTCTCAGTCAGTGAACCATCATCATCAACATCAGCTGCAGAGAACATGGCAAACACCCATTTTGAGGCCACCATATCACCACCATTTATAGACTTCCTTGGAGTAGGAGCCACATGA 1431 0.4661 MEVPLAFQVCEPHFLVGVMGVGITYFEVVLMLQPSDGVKIEVRASQGGEEVKGREEKRGEGSVVVWVSVKKPTLVLAASKLDSTFCHQENDGMAKQCHIYKPFSPSSSMGVFEDMGSLSISPSYGAYCCKSSDQRGLHMGFPLMGNCSSSLDDTQNSEGGGGDGKGSETSDGFGENSGVAMEIINKGINLNEERPNESSGLDGGQSKLCARGHWRPAEDSKLRELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMAAHRWYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRKMNQAAHKKLEVGGGSYVCRDTSIRTEHNSLNVCNGNNFIKSSHHFPFAAHMGGGGSIINGSHMTSSEEAVSSGGGDWLVGASSSSNTMLPPHHTGPCPSQTPFHFLSDSVASTSQVSVSEPSSSTSAAENMANTHFEATISPPFIDFLGVGAT* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1881 476 ProSiteProfiles Myb-like domain profile. 258 308 IPR001005 -
Vvi14g1881 476 SMART sant 262 310 IPR001005 -
Vvi14g1881 476 SMART sant 210 259 IPR001005 -
Vvi14g1881 476 CDD SANT 265 305 IPR001005 -
Vvi14g1881 476 Gene3D - 264 334 - -
Vvi14g1881 476 MobiDBLite consensus disorder prediction 150 176 - -
Vvi14g1881 476 SUPERFAMILY Homeodomain-like 211 304 IPR009057 -
Vvi14g1881 476 Gene3D - 211 262 - -
Vvi14g1881 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 257 IPR017930 -
Vvi14g1881 476 ProSiteProfiles Myb-like domain profile. 211 257 IPR001005 -
Vvi14g1881 476 CDD SANT 214 255 IPR001005 -
Vvi14g1881 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 312 IPR017930 -
Vvi14g1881 476 FunFam MYB transcription factor 211 262 - -
Vvi14g1881 476 FunFam MYB transcription factor 264 333 - -
Vvi14g1881 476 Pfam Myb-like DNA-binding domain 214 274 - -
Vvi14g1881 476 PANTHER MYB PROTEIN-RELATED 197 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1881 Vvi-Chr14 29640673 29642780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1881 210 323 MYB Transcription Factor Family AT1G69560 91.228 3.15e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1881 Myb_DNA-bind_6 5.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1881 K09422 - vvi:100245627 803.897