Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1875 ATGGCATATAGAGGTGAAGGGAATTCTGGAGACTGGTCCCTCGAGGATTACCTGAGGAGAAACAGCGATGCCTTCGCTATGGTCATGCCGTTTCAGGGAGTTGCGCTTCGAGGTGAGGGACCGGAGAATCGGTCCAGGAGAGTGGCACCGGCGGAGGTGATAAACGCGACGCCCACGGTGGTCTTTTCCGAAGCCACCGACTGCGTGATATGTTTGGAGCTGGTCCCGGTGGGTGGCGAGGTTCGGGAGATGCCCTGCGGGCATCGATTTCACTCCCACTGCATCCTCAGATGGCTGGGAATTCACGGGTCCTGCCCAGTTTTCCGGCGCATGATACCGGTGGATAGGGTGACCGGTCGGAGGAGCTTTCTATTGAGGGTCATCCGCCGTGAAGATCTTGGGAGGAACCCGGGTTCGCTGTCGAATCTGAGTACGGATGGAGTGAACGATGCCAGAGGGAGCATCGTTGAGTTGAGTTGGGTGAATGATTTCGAACCCGGGTTCACTGATTATTAG 516 0.5678 MAYRGEGNSGDWSLEDYLRRNSDAFAMVMPFQGVALRGEGPENRSRRVAPAEVINATPTVVFSEATDCVICLELVPVGGEVREMPCGHRFHSHCILRWLGIHGSCPVFRRMIPVDRVTGRRSFLLRVIRREDLGRNPGSLSNLSTDGVNDARGSIVELSWVNDFEPGFTDY* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1875 171 ProSiteProfiles Zinc finger RING-type profile. 68 109 IPR001841 -
Vvi14g1875 171 PANTHER SI:CH211-59O9.10 30 111 - -
Vvi14g1875 171 Pfam Ring finger domain 67 107 IPR001841 -
Vvi14g1875 171 SUPERFAMILY RING/U-box 61 115 - -
Vvi14g1875 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 114 IPR013083 -
Vvi14g1875 171 SMART ring_2 68 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1875 Vvi-Chr14 29603251 29603862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1875 49 115 C3H Transcription Factor Family AT1G26800 51.471 1.69e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1875 - K11982 vvi:104881712 348.206