Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1866 ATGGCTGAGAGGAATGATACTGATAAAATGGATGATGTCATGCTGCCTGGCTTCAGGTTTCATCCCACAGATGAGGAGCTTGTGGGGTTCTACCTAAAGAGGAAGATTCAGCAGAGGTCTCTGCCGATTGAGCTGATCAAGCAGGTGGATATCTACAAATATGATCCATGGGATCTTCCAAAAGAGCTGGCGACCACAGGGGAGAAGGAGTGGTATTTCTACTGCCCAAGAGACAGAAAATACAGAAACAGTGCTAGACCCAACAGGGTGACTGGAGCTGGATTTTGGAAGGCCACTGGCACTGACCGCCCCATCTACTCCTCTGATGGCACCAGGTGTATTGGACTGAAGAAATCCCTCGTCTTCTACAGAGGCAGAGCTGCTAAAGGGATCAAAACTGACTGGATGATGCATGAGTTCAGGCTTCCTTCTCTTGGAGACTCAGCCCCACCCAAGAAGCTCTTGGATAAAAGCCTTCCTCCAAATGATTCATGGGCAATTTGCAGGATCTTCAAGAAAACCAACTCCATGGCACAGAGGGCTCTCTCCCACTCTTGGGTCTCTCCCCCATTTCCTGCAACAGCTATGACAGCTGATATACTCTCCCATGGTGCCCACTGCACACAGTTCAGTTCAGAGAACATCTCTTGCACAACTGAAAATGGATCATCCATAGACTTATGCTGCAATAATGATTTACAGCAGGCTTCACCTGCTAGCTTCTCAGCTCTAGATATTCCCTCTTACAAAGCCATTAACCCAGCTGCCTGCAAGCCATCTATGTTCCCCATCCCAAATGCAGGAGACCTCCAGAACAGCTCCATGTTTTTGCCTCTTGAAGTTCCAGGATCGTCCCCTGGGCTTTTGAATCTTCCCCTGGGCTCCGACAGCATCGACTTTGGAGGGCCACAGCAGCAATTCAATGGCTTCTCAATCAGTTTACCAGAGGATCTGCAAGGAAACATCCACACTGGAGAAGAAGACACAGGCTTCAGGAAGAGCGCAAGTGCAGGACAAGCTAATAATCCATGTGGGAACATTCGCTCTATTGGATTTCCTTTCAGCTTGCCTTCAAATGTTGCTGATCCATGGAAGCTTAATCTCCCATGGGACTCTCCTCCATGTCCCAGTGAGATGTCCACAAGTTATTCCACAAACAAAGGCTATACATAA 1173 0.4825 MAERNDTDKMDDVMLPGFRFHPTDEELVGFYLKRKIQQRSLPIELIKQVDIYKYDPWDLPKELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTRCIGLKKSLVFYRGRAAKGIKTDWMMHEFRLPSLGDSAPPKKLLDKSLPPNDSWAICRIFKKTNSMAQRALSHSWVSPPFPATAMTADILSHGAHCTQFSSENISCTTENGSSIDLCCNNDLQQASPASFSALDIPSYKAINPAACKPSMFPIPNAGDLQNSSMFLPLEVPGSSPGLLNLPLGSDSIDFGGPQQQFNGFSISLPEDLQGNIHTGEEDTGFRKSASAGQANNPCGNIRSIGFPFSLPSNVADPWKLNLPWDSPPCPSEMSTSYSTNKGYT* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1866 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 216 - -
Vvi14g1866 390 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Vvi14g1866 390 FunFam NAC domain-containing protein 35 23 176 - -
Vvi14g1866 390 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Vvi14g1866 390 SUPERFAMILY NAC domain 13 173 IPR036093 GO:0003677|GO:0006355
Vvi14g1866 390 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1866 Vvi-Chr14 29535161 29536515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1866 3 203 NAC Transcription Factor Family AT5G39820 67.699 4.65e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi14g1866 NAM 6.9e-37 No_clan