Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1863 ATGGGAAGACCACCTTGCTGTGATAAAATCGGTGTGAAGAAAGGACCATGGACACCTGAAGAAGATATCATACTAGTCTCTTATATCCAGGAACATGGTCCGGGGAATTGGAGGGCTGTTCCTACTAATACAGGATTGCTTAGATGCAGTAAGAGTTGCAGGCTTAGATGGACTAACTACCTCCGGCCTGGAATCAAAAGAGGTAACTTTACCGACCATGAGGAGAGGATGATCATTCACCTTCAAGCTCTTTTGGGCAACAGATGGGCTGCCATAGCTTCTTATCTTCCTCAGAGAACAGACAATGACATCAAGAACTATTGGAATACCCATTTGAAGAAAAAGCTGAAAAAGCTTCAAACAGGCTCATCCTCAGATGGTCACTCTAGAGATGTGTCCCTAGCATCACAGTCAATCTCAAGAGGCCAGTGGGAGAGAAGGCTTCAAACTGATATCCACATGGCTAAGCAAGCTCTTCATGAGGCCTTGTCTCTGGAGAAGCCACACAGTTCCTCTGATCAATTGAACCCCACTAATGGCTATCAGACTTGCACAAGACCTGGTCAAGCATCTTCCTATGCATCCAGTACTGAGAACATTGCTCGGTTGCTAGAAGGGTGGATGAGAAATTCGCCCAAGCAAGCTAGAGCAAGCTCAGCTACCACTCAAAATTCATTCATCAACACTGCTGGGACCGATTCCACCTCTAGTGAAGGGACCCCAAGTGCAGCAAACAACGAAGACATTGAATTAACTGAAGCATATGAAATGCTCTTTGGATTCGACTCCTTGGACTCTTCCAATTCTGAAATTTCCCAATCTAAATCCCCTGAGGCAAGCTTTTTCCAGGAAGAAAGCAAGCCGGATCTCAGCGACCAAGTGCCATTGTCATTCCTTGAGAAGTGGCTATTTGAAGAAGGCGGTGCTCAAGGAAAAGAAGACCTTACTGATATCTCATTAGATGAAAGTCCTGATTTTTTCTGA 984 0.4512 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSSSDGHSRDVSLASQSISRGQWERRLQTDIHMAKQALHEALSLEKPHSSSDQLNPTNGYQTCTRPGQASSYASSTENIARLLEGWMRNSPKQARASSATTQNSFINTAGTDSTSSEGTPSAANNEDIELTEAYEMLFGFDSLDSSNSEISQSKSPEASFFQEESKPDLSDQVPLSFLEKWLFEEGGAQGKEDLTDISLDESPDFF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1863 327 MobiDBLite consensus disorder prediction 212 244 - -
Vvi14g1863 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi14g1863 327 Gene3D - 13 66 - -
Vvi14g1863 327 CDD SANT 16 61 IPR001005 -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 168 196 - -
Vvi14g1863 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi14g1863 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Vvi14g1863 327 SMART sant 66 114 IPR001005 -
Vvi14g1863 327 SMART sant 13 63 IPR001005 -
Vvi14g1863 327 FunFam Transcription factor MYB30 68 126 - -
Vvi14g1863 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 165 196 - -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 266 293 - -
Vvi14g1863 327 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi14g1863 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 266 281 - -
Vvi14g1863 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi14g1863 327 CDD SANT 69 111 IPR001005 -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 211 244 - -
Vvi14g1863 327 Gene3D - 69 135 - -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 122 140 - -
Vvi14g1863 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi14g1863 327 MobiDBLite consensus disorder prediction 119 140 - -
Vvi14g1863 327 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1863 Vvi-Chr14 29512383 29513600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1863 1 306 MYB Transcription Factor Family AT5G62470 53.107 1.61e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi14g1863 Myb_DNA-binding 8.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1863 K09422 - vvi:100257755 666.381