Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1861 ATGCCAGCTTCTGATTCTGGATCTCTGGAAGAATTGGAGAATTGCAGCTGTTTTCTTGGTGGGTGTGGAGAAGAAGGTAGAGTAGATTTGGGGTCTTGTAGGATGAGGAAGCGTCAAGTTGTGCTTAGGAGAGATGAGCCATCAAGAAGCTCAGCTAATTCATCTTTCACAGTGAGGAGTGTGAGGTATGGAGAGTGTCAGAAGAATCACGCTGCGGGTGTTGGAGGGTATGCTGTTGATGGGTGCAGAGAGTTCATGGCGAGCGGTGAAGAGGGAACCAGCAGTGCACTCACCTGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCTCCGGGAAGTGGAAACCGAGTTAGTGTGCGAGTGTTCTTCCCCTACCTCAAATGGGAAATAG 390 0.5179 MPASDSGSLEELENCSCFLGGCGEEGRVDLGSCRMRKRQVVLRRDEPSRSSANSSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGEEGTSSALTCAACGCHRNFHLREVETELVCECSSPTSNGK* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1861 129 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Vvi14g1861 129 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Vvi14g1861 129 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Vvi14g1861 129 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1861 Vvi-Chr14 29502797 29503186 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1861 35 128 Zinc finger-homeobox gene family AT3G28917 74.747 1.74e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi14g1861 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1861 - - vvi:100262881 271.552