Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1859 ATGAGGCACCGGCAAGTTGTGCTGAGGAGAAATGAGCCGTCAAGAAGATCAACTAATTCATCTTTGACAGTGAGGAGTGTGAGGTATGGAGAGTGCCAGAAGAATCACGCTGCAGGCATTGGAGGGCATGCTGTTGATGGGTGTAGGGAGTTCATGGCGAGCGGCCAAGAGGGAACCAGCAGTGAACTCATCTGCGCAGCCTGCGGCTGCCACAGGAACTTCCACAGGCGGGAAGTGGAAACCGAGGTCTTGTGCCCGTGCTCTTCCGCTCCCTCAAACGGGAGATAG 288 0.5556 MRHRQVVLRRNEPSRRSTNSSLTVRSVRYGECQKNHAAGIGGHAVDGCREFMASGQEGTSSELICAACGCHRNFHRREVETEVLCPCSSAPSNGR* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1859 95 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 82 - -
Vvi14g1859 95 MobiDBLite consensus disorder prediction 1 20 - -
Vvi14g1859 95 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
Vvi14g1859 95 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Vvi14g1859 95 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 28 79 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1859 Vvi-Chr14 29470988 29471275 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1859 1 94 Zinc finger-homeobox gene family AT3G28917 70.707 1.86e-41 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi14g1859 ZF-HD_dimer 2.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1859 - - vvi:100268029 201.83