Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1858 ATGAACAATATAGTAAAACATTTTTTTCCGGAAGCCGAGACAGAGACGCCGACGCAGATCCAACCCAGGAAGGGGTTGTCCTTGACGAACGGGGTGTTGAAGAGGCACCAACAACACCACCACCACCACCACCACCATTTCGCGGCGCCCCAGGTGGTGGTGGCGTACAAGGAATGTCTCAAGAACCACGCGGCTAGCTTGGGGGGCCACGCGTTGGATGGGTGTGGCGAGTTCATGCCCTCGCCGACCGCCACCTCAGCCGACCCGACCTCGCTGAAATGCGCTGCCTGCGGGTGCCACCGGAACTTCCACCGCCGAGAGCCGGACGACCCGCCCCCCACCACCCACGTCATCGAGTACCAGCCCCACCACCGCCACCAGCCCCCGCCTCCCCCGCCGCGCCCGCGCAGCCCCAATTCCCCCTCTCCGCCGCCGATCTCCTCCTCCTACTACCCCTCCGCGCCGCACATGCTGCTCGCCCTCTCCGCAGGCATCTCCGGCCCCCCTGAGAACGCCCCTCCCATTTCCTCTTCCCCCGCCTCGGGCGCCAACGGGCGGAAGCGGTTCCGTACCAAATTCAGCCAAGGGCAGAAGGAGAAGATGTTCGAATTCGCGGAGAGAGTTGGGTGGAAGATGCAGAAGCGAGACGAAGAGCTAGTGGCGGAGTTCTGCAATGAAGTTGGGGTCGACAAAGGAGTTCTAAAGGTGTGGATGCATAACAACAAGAACACCTTCGGCAAACGAGACGTCAATGGCAGCAGAACCAGTCTCGACGACAACAACGAGAACAACGAGAACAACGAGAACACCGAGAACACCGAGACCAACGAGACCAACGAGAACAACGACAACACCCCTCACACCATGGAAACCATCCACCATACCCCAAATCACAACCACACCAACCCCAACCCCAACAACAACGATACTACCACTGCACATCTCGCCACTAATGTTCCCTTATACAAACACTTAAGAATATTTTCAGCATTTTTAGCAGCTTATTTTATAGAGCTTATGGTATCACCTTTTTTATTCAATCTCACTTTACTTTATTTAAGTGGATAA 1068 0.5646 MNNIVKHFFPEAETETPTQIQPRKGLSLTNGVLKRHQQHHHHHHHHFAAPQVVVAYKECLKNHAASLGGHALDGCGEFMPSPTATSADPTSLKCAACGCHRNFHRREPDDPPPTTHVIEYQPHHRHQPPPPPPRPRSPNSPSPPPISSSYYPSAPHMLLALSAGISGPPENAPPISSSPASGANGRKRFRTKFSQGQKEKMFEFAERVGWKMQKRDEELVAEFCNEVGVDKGVLKVWMHNNKNTFGKRDVNGSRTSLDDNNENNENNENTENTETNETNENNDNTPHTMETIHHTPNHNHTNPNPNNNDTTTAHLATNVPLYKHLRIFSAFLAAYFIELMVSPFLFNLTLLYLSG* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1858 355 Pfam ZF-HD protein dimerisation region 54 108 IPR006456 -
Vvi14g1858 355 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 56 107 IPR006456 -
Vvi14g1858 355 SUPERFAMILY Homeodomain-like 174 247 IPR009057 -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 163 187 - -
Vvi14g1858 355 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 244 - -
Vvi14g1858 355 FunFam Zinc-finger homeodomain protein 2 175 247 - -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 104 151 - -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 243 312 - -
Vvi14g1858 355 NCBIfam homeobox domain, ZF-HD class 186 243 IPR006455 -
Vvi14g1858 355 Gene3D - 175 246 - -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 124 150 - -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 244 312 - -
Vvi14g1858 355 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 107 IPR006456 -
Vvi14g1858 355 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1858 Vvi-Chr14 29448389 29462308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1858 13 242 ZF-HD Transcription Factor Family AT5G15210 58.723 3.21e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi14g1858 ZF-HD_dimer 3.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1858 - - vvi:100245714 472.626