LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1853	ATGGCCACAACAGATCCAAATCTCAGCAACTCAACTTCCATAAACGAGTTGACCACAGCACTGCACCACCCAGATTCCCAAAACTCAAACCCATGTTTTCTCTGGAGGCTCTTTCTAGAACACTACCCACCTGGTTTTCTCAGAAAGGTGGTAGCAGAGGTAATAGCAACCTATCTGTTGGTGTTTGTGACATGTGGGTCTGCAGCTCTGAGTGCGAGTGATGAACAGAGAGTCTCAAAGCTTGGAGCATCGGTTGCAGGTGGACTGATAGTCACAGCTATGATCTATGCAGTGGGTCACATCTCCGGTGCACACATGAACCCTGCTGTCACTCTAGCTTTTGCTGCTGTTAGGCATTTTCCATGGAAACAGGTCCCACTATACGCAGCAGCCCAACTAACAGGAGCAATTGGAGCTGCATTTACGCTGCGTGAGCTGCTGTACCCGATCAAGCATTTAGGCACTACAACTCCTTCTGGAACCGAGATTCAAGCTTTGGTCATGGAGATAGTCGTAACCTTTTCAATGATGTTCATCACCTCTGCTGTTGCCACTGACACTAAAGCTATAGGAGAGCTAGCAGGCATAGCAGTTGGTTCAGCAGTATGCATAACTTCCATCTTGGCAGGTCATTTGCAGACCAGTATCAGGTGGCTCTATGAACCCAGCAAGGACTCTAGGGCCAGCGATTGCCAGCGCTGA	702	0.4886	MATTDPNLSNSTSINELTTALHHPDSQNSNPCFLWRLFLEHYPPGFLRKVVAEVIATYLLVFVTCGSAALSASDEQRVSKLGASVAGGLIVTAMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQVPLYAAAQLTGAIGAAFTLRELLYPIKHLGTTTPSGTEIQALVMEIVVTFSMMFITSAVATDTKAIGELAGIAVGSAVCITSILAGHLQTSIRWLYEPSKDSRASDCQR*	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1853	233	PRINTS	Major intrinsic protein family signature	168	186	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi14g1853	233	PRINTS	Major intrinsic protein family signature	48	67	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi14g1853	233	PRINTS	Major intrinsic protein family signature	87	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi14g1853	233	PRINTS	Major intrinsic protein family signature	124	143	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi14g1853	233	Gene3D	Glycerol uptake facilitator protein.	26	216	IPR023271	-
	Vvi14g1853	233	SUPERFAMILY	Aquaporin-like	40	210	IPR023271	-
	Vvi14g1853	233	ProSitePatterns	MIP family signature.	105	113	IPR022357	-
	Vvi14g1853	233	Pfam	Major intrinsic protein	46	212	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Vvi14g1853	233	PANTHER	AQUAPORIN NIP2-1	26	212	IPR034294	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1853	Vvi-Chr14	29407425	29409549	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1853	7	210	Major Intrinsic Protein MIP	AT4G18910	41.784	1.06e-47	155

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1853	K09874		-	vvi:100265406	409.453