Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1832 ATGGTTTCGGAGGTTCCTTCAGATAACGATGGCTGTGTGGCGGGGGAGACAGTTGTTGGCAGGCTGTCTCCTCGAAAAAAGAACCCTGGGAAAGTGCCTAAAAAAATTCATAAAGCTGAGAGAGAGAAGCTGAAACGTGACCACTTGAATGTCCTATTCCTTGAGCTGGGCAACATTCTTGACTCAGCTCAGCAGAACAATGGAAAGGCCTGTGTATTGACTGATGCCACTCGTCTTCTAAGAGACCTGCTTGCTCAGGTTGACTGTCTCAAAAGGGATAATGCAGCTCTTTTATCTGAATCTCACTATGTGAGTATGGAGAAGAACGAGCTGAGAGAGGACAATTCAGCTCTAGAAGCTCAGATCAAGAAGCTGCAGAGCGAGCTAGAAGAAAGGATTCGGTCCAAACCAGCATGGAATTCAGATCCTTCTCAGTTGGATCACAACAGCACTGCCCCACAGCTACCAGAAGACCATCTCATGTTTCCTGTAACTGATCATGCATCGCAAACAGCACCTGTTGTGGGTCCCGTCTTTGTTGTTCCCTTACATCAGGACCTTCAAACATTCCCGCAACCCAATGCTGCAGCCTCAAATGTGAGCAGACCCCATGCTCGCTATCCATCCCCATCAGACTGTTGGCCATCACAAATTCTAGATAGTCAGCTGAAGACACCCGAGCAACATGAGGTTGGTAGTGGCACTAGCTCTGGAACCAGCAGCAGGGGAGACTAA 735 0.4844 MVSEVPSDNDGCVAGETVVGRLSPRKKNPGKVPKKIHKAEREKLKRDHLNVLFLELGNILDSAQQNNGKACVLTDATRLLRDLLAQVDCLKRDNAALLSESHYVSMEKNELREDNSALEAQIKKLQSELEERIRSKPAWNSDPSQLDHNSTAPQLPEDHLMFPVTDHASQTAPVVGPVFVVPLHQDLQTFPQPNAAASNVSRPHARYPSPSDCWPSQILDSQLKTPEQHEVGSGTSSGTSSRGD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1832 244 MobiDBLite consensus disorder prediction 138 152 - -
Vvi14g1832 244 Coils Coil 108 135 - -
Vvi14g1832 244 MobiDBLite consensus disorder prediction 1 33 - -
Vvi14g1832 244 MobiDBLite consensus disorder prediction 214 244 - -
Vvi14g1832 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 33 83 IPR011598 GO:0046983
Vvi14g1832 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 97 IPR036638 GO:0046983
Vvi14g1832 244 PANTHER TRANSCRIPTION FACTOR BHLH47 1 240 - -
Vvi14g1832 244 MobiDBLite consensus disorder prediction 193 244 - -
Vvi14g1832 244 Coils Coil 73 100 - -
Vvi14g1832 244 MobiDBLite consensus disorder prediction 133 154 - -
Vvi14g1832 244 Gene3D - 31 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1832 Vvi-Chr14 29249333 29252269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1832 1 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 42.570 1.29e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1832 - - vvi:100259339 460.299