LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1829	ATGGTTCACGTCAGTTTCTACCGGAACTATGGGAAGACATTCAAGAAGCCCCGTCGTCCCTACGAGAAGGAGCGTCTGGATGCAGAGCTGAAGCTTGTAGGAGAGTATGGCCTCCGATGTAAGAGAGAGTTGTGGAGGGTTCAGTATGTACTGAGCCGCATCCGTAATAATGCTAGGATGCTTCTCACTCTCGATGAGAAAAATCCCCGCCGCATCTTTGAGGGTGAGGCTCTTCTAAGGAGGATGAACAGGTATGGGCTTTTGGATGAGAGCCAGAACAAGCTGGATTATGTGTTGGCCCTGACTGTGGAGAACTTCCTCGAGCGCCGTCTCCAGACACTTGTGTTCAAGTCGGGTATGGCTAAGTCAATTCACCATGCTCGTGTCCTCATTCGGCAGAGGCATATCAGGGTTGGGAGACAGGTGGTCAACATACCCTCATTCTTGGTGAGGATGGACTCTCAGAAGCATATCGATTTCTCCCTCACAAGTCCCCTTGGAGGTGGTCGCCCAGGAAGAGTGAAGCGAAAGAACCAGAAGGCCGCTGCCAAGAAGGCTGCAGGCGGAGACGGAGATGAGGAGGATGAGGATTGA	594	0.5219	MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGDGDEEDED*	198

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1829	197	Pfam	S4 domain	109	151	IPR002942	GO:0003723
	Vvi14g1829	197	FunFam	40S ribosomal protein S9	108	188	-	-
	Vvi14g1829	197	MobiDBLite	consensus disorder prediction	161	197	-	-
	Vvi14g1829	197	SMART	Ribosomal_S4_2	8	108	IPR001912	GO:0019843
	Vvi14g1829	197	NCBIfam	30S ribosomal protein S4	11	166	IPR005710	GO:0003735\|GO:0006412\|GO:0015935
	Vvi14g1829	197	ProSitePatterns	Ribosomal protein S4 signature.	107	131	IPR018079	GO:0019843
	Vvi14g1829	197	SUPERFAMILY	Alpha-L RNA-binding motif	12	159	-	-
	Vvi14g1829	197	Gene3D	-	108	166	IPR036986	GO:0003723
	Vvi14g1829	197	Pfam	Ribosomal protein S4/S9 N-terminal domain	8	108	IPR001912	GO:0019843
	Vvi14g1829	197	PANTHER	30S 40S RIBOSOMAL PROTEIN	7	185	IPR022801	GO:0003735\|GO:0015935\|GO:0019843

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1829	Vvi-Chr14	29223194	29226404	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1829	1	187	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	90.374	2.57e-126	352

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1829	K02997		-	vvi:100264515	358.992

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