Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1824 ATGTCTAGCAGAAGGTCGAGGCAGTCAGGGTCTTCGAGGATCTCAGATGATCAGATCATTGAACTTGTGTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATAGGCGTTCAGACAAGGTGTCAGCTTCCAAGGTCCTACAGGAGACCTGCAACTACATTAGAAGCTTACACAGAGAGGTGGATGACCTAAGCGAACGACTGTCCAGGTTACTGGCTACAGTCGATGCTGATAGTCCTGAGGCTGCAATAATCAGGAGTTTAATTATGTAA 273 0.4689 MSSRRSRQSGSSRISDDQIIELVSKLQQLLPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSRLLATVDADSPEAAIIRSLIM* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1824 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 3 57 IPR011598 GO:0046983
Vvi14g1824 90 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vvi14g1824 90 CDD bHLH_AtPRE_like 16 74 - -
Vvi14g1824 90 Gene3D - 3 82 IPR036638 GO:0046983
Vvi14g1824 90 FunFam Transcription factor ILI6 5 86 - -
Vvi14g1824 90 Pfam Helix-loop-helix DNA-binding domain 21 58 IPR011598 GO:0046983
Vvi14g1824 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 76 IPR036638 GO:0046983
Vvi14g1824 90 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1824 Vvi-Chr14 29184388 29185078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1824 11 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.309 2.56e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi14g1824 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1824 - - vvi:100252480 157.918