Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi14g1821 | ATGATTTGCATTGAAATGGCCTTCCTTCCTACAGATTTCCTTTTTCAGACTCATCTAGAGGACCACCCTCCTTACACCTCTCACACTGGCCTCCCCTCATGTACACCTCAGGACTTCCATGGTGTTATCCCAGTCCTAATGAAGAGATCCATGTCTTTCTCTGGGGTTGATGGGTGTGAAGAAGTGCATGGAGATGATGACTTTTCGGATGATGGATCGCAGGCTGGGGAGAAGAAGAGGAGGCTCAACTTGGAACAGGTGAAGACCCTTGAGAAGAACTTTGAGTTGGGCAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCTAGGACCTTGGGTCTGCAACCCAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGGTGGAAAACCAAGCAACTAGAGAAAGACTATGACCTATTGAAGAGACAGTTCGAAGCAGTCAAGGCTGACAATGATGCTCTTCAGGCTCAGAACAAGAAGCTTCATGCAGAGTTATTGGCTCTAAAAAGTAGAGAACCCAAGGGAGTTGGACCCATAAACCTTAACAAAGAAACTGATCAGATTTCTTGGAGCAATGGAAGTGAGCACAGCTCCGGCATCAACCTAGACATCTCAAGAACAACTCTCATAAACAGCCCCGTCTCTTCCCAATTAAGCAGCAAGCAATTCTTCCCTTCATCCCTCAGGCCAGCAAGCATAACCCAACTCCTCCAAGGCTCCCCAAGATCAGACATCCACTGCCAAAAGATCGACCAAATTGTTCAAGACGAAAGCTTCTGCAACATATTCAGTGGCATCAGCGACCAGTCTGGATTATGGGCTTGGCCGGAGCAGGACCATTTCCATCAAAACCAGGCCTAG | 867 | 0.4787 | MICIEMAFLPTDFLFQTHLEDHPPYTSHTGLPSCTPQDFHGVIPVLMKRSMSFSGVDGCEEVHGDDDFSDDGSQAGEKKRRLNLEQVKTLEKNFELGNKLEPERKMQLARTLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNDALQAQNKKLHAELLALKSREPKGVGPINLNKETDQISWSNGSEHSSGINLDISRTTLINSPVSSQLSSKQFFPSSLRPASITQLLQGSPRSDIHCQKIDQIVQDESFCNIFSGISDQSGLWAWPEQDHFHQNQA* | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi14g1821 | 288 | CDD | homeodomain | 78 | 134 | IPR001356 | GO:0003677 | |
Vvi14g1821 | 288 | ProSiteProfiles | 'Homeobox' domain profile. | 73 | 133 | IPR001356 | GO:0003677 | |
Vvi14g1821 | 288 | Pfam | Homeodomain | 78 | 131 | IPR001356 | GO:0003677 | |
Vvi14g1821 | 288 | SMART | HOX_1 | 76 | 137 | IPR001356 | GO:0003677 | |
Vvi14g1821 | 288 | SUPERFAMILY | Homeodomain-like | 66 | 135 | IPR009057 | - | |
Vvi14g1821 | 288 | ProSitePatterns | 'Homeobox' domain signature. | 108 | 131 | IPR017970 | GO:0000981|GO:0006355 | |
Vvi14g1821 | 288 | Gene3D | - | 70 | 139 | - | - | |
Vvi14g1821 | 288 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 70 | 137 | - | - | |
Vvi14g1821 | 288 | PRINTS | Lambda-repressor HTH signature | 104 | 113 | IPR000047 | GO:0003677 | |
Vvi14g1821 | 288 | PRINTS | Lambda-repressor HTH signature | 113 | 129 | IPR000047 | GO:0003677 | |
Vvi14g1821 | 288 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 49 | 217 | IPR045224 | GO:0003700 | |
Vvi14g1821 | 288 | Pfam | Homeobox associated leucine zipper | 133 | 173 | IPR003106 | GO:0006355|GO:0043565 | |
Vvi14g1821 | 288 | Coils | Coil | 125 | 173 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi14g1821 | Vvi-Chr14 | 29151629 | 29152832 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi14g1821 | 6 | 284 | Homeobox Transcription Factor Family | AT1G69780 | 50.498 | 1.28e-85 | 256 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Vvi14g1821 | Homeodomain | 8.8e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi14g1821 | K09338 | - | vvi:100853126 | 590.497 |