Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1821 ATGATTTGCATTGAAATGGCCTTCCTTCCTACAGATTTCCTTTTTCAGACTCATCTAGAGGACCACCCTCCTTACACCTCTCACACTGGCCTCCCCTCATGTACACCTCAGGACTTCCATGGTGTTATCCCAGTCCTAATGAAGAGATCCATGTCTTTCTCTGGGGTTGATGGGTGTGAAGAAGTGCATGGAGATGATGACTTTTCGGATGATGGATCGCAGGCTGGGGAGAAGAAGAGGAGGCTCAACTTGGAACAGGTGAAGACCCTTGAGAAGAACTTTGAGTTGGGCAACAAGCTTGAGCCTGAGAGGAAAATGCAGCTGGCTAGGACCTTGGGTCTGCAACCCAGACAGATTGCTATATGGTTCCAAAACAGGAGGGCCAGGTGGAAAACCAAGCAACTAGAGAAAGACTATGACCTATTGAAGAGACAGTTCGAAGCAGTCAAGGCTGACAATGATGCTCTTCAGGCTCAGAACAAGAAGCTTCATGCAGAGTTATTGGCTCTAAAAAGTAGAGAACCCAAGGGAGTTGGACCCATAAACCTTAACAAAGAAACTGATCAGATTTCTTGGAGCAATGGAAGTGAGCACAGCTCCGGCATCAACCTAGACATCTCAAGAACAACTCTCATAAACAGCCCCGTCTCTTCCCAATTAAGCAGCAAGCAATTCTTCCCTTCATCCCTCAGGCCAGCAAGCATAACCCAACTCCTCCAAGGCTCCCCAAGATCAGACATCCACTGCCAAAAGATCGACCAAATTGTTCAAGACGAAAGCTTCTGCAACATATTCAGTGGCATCAGCGACCAGTCTGGATTATGGGCTTGGCCGGAGCAGGACCATTTCCATCAAAACCAGGCCTAG 867 0.4787 MICIEMAFLPTDFLFQTHLEDHPPYTSHTGLPSCTPQDFHGVIPVLMKRSMSFSGVDGCEEVHGDDDFSDDGSQAGEKKRRLNLEQVKTLEKNFELGNKLEPERKMQLARTLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKADNDALQAQNKKLHAELLALKSREPKGVGPINLNKETDQISWSNGSEHSSGINLDISRTTLINSPVSSQLSSKQFFPSSLRPASITQLLQGSPRSDIHCQKIDQIVQDESFCNIFSGISDQSGLWAWPEQDHFHQNQA* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1821 288 CDD homeodomain 78 134 IPR001356 GO:0003677
Vvi14g1821 288 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Vvi14g1821 288 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Vvi14g1821 288 SMART HOX_1 76 137 IPR001356 GO:0003677
Vvi14g1821 288 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
Vvi14g1821 288 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Vvi14g1821 288 Gene3D - 70 139 - -
Vvi14g1821 288 FunFam Homeobox-leucine zipper protein ATHB-13 70 137 - -
Vvi14g1821 288 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Vvi14g1821 288 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Vvi14g1821 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 217 IPR045224 GO:0003700
Vvi14g1821 288 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Vvi14g1821 288 Coils Coil 125 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1821 Vvi-Chr14 29151629 29152832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1821 6 284 Homeobox Transcription Factor Family AT1G69780 50.498 1.28e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi14g1821 Homeodomain 8.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1821 K09338 - vvi:100853126 590.497