Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1820 ATGGGATTAGGCCCGGATGCTATTCAGGTGGGGAATTGGGAGGTGGGCAATTCAAAGGGAAGGAAGAAGAAAGATGATGAAGAAGAGGCGACAGGGTGTTGGATTAAGTTTAGATTTATGGGGAGTTGCATGTCTGCAAGGTCCAAAGTAGAGAGCTCTGTAAGTAGCTCTAGCACACAATATGCGGAAAGTAAATCTACGAATGATACAAGCAGAGATCAACCAGTTGCACCAGTTGTATCCTCTTCAACCACTAGCAATGGGGAAAGTACTCCATCAACGCCCAACACAGGCGAGGAACTGAAAGTTGCTTCTCAGCTCCGAAAGTTCACCTTCAATGAGCTTAAATCAGCAACAAGGAATTTTAGACCAGAGAGTCTTCTTGGTGAGGGTGGGTTTGGTTGTGTTTTCAAGGGATGGATTAATGGGACTGGAACAACACCTGTCAAACCTGGTACAGGGCTTACTGTTGCAGTGAAAACCCTCAATCATGATGGACTTCAGGGTCATAAAGAATGGCTTGCTGAAGTTAATTTTCTTGGTGATCTCCTCCATCCTAATTTGGTTAAATTAATTGGTTATTGCATTGAGGATGATCAAAGGCTGCTTGTTTATGAGTTTATGCCTCGTGGAAGCTTGGAGAATCACCTTTTCAGAAGGGCCCTGCCTCTTCCTTGGTCCATCAGAATGAAAATTGCACTTGGTGCTGCAAAGGGTCTTGCCTTTCTTCATGAGGAAGCTGAAAGGCCAGTAATATATCGAGATTTTAAAACATCTAATATCCTGTTAGATGTGGACTACAATGCTAAGCTTTCTGACTTTGGACTTGCCAAAGACGGTCCAGAAGGAGATAAGACACATGTATCTACTCGTGTAATGGGCACCTATGGCTATGCAGCCCCTGAGTATGTGATGACAGGGCATCTTACGTCAAAGAGTGATGTTTATAGCTTTGGGGTGGTTCTCCTTGAAATGTTGACTGGGCGAAGATCCATGGACAAAAACCGTCCAAATGGGGAGCATAACCTTGTGGAATGGGCACGACCTCATCTTGGAGAGAGGAGAAGGTTCTATAGGTTGCTAGATCCCCGTCTCGAAGGTCGCTTCTCAATCAAAGGTGCACAGAAAGCGGCCCAATTGGCTGCACACTGCCTTAGTCGGGACCCAAAAGCCAGACCTCTAATGAGTGAAGTTGTTGAAGCCCTAAAGCCTCTGCCAAATCTCAAGGACATGGCCAGTTCTTCATCCTTTTTCCAGACCATGCAAGCAGAGCGCACGGGCTCCACCCCTAACTCTAGAAGTGGCATTAGAGCACAGGCAGGGTTCCTATCAAGGAATGGACAACCAAACAGAAGTCTCTCCATGCCAAACGGTCCACATGCCTCTCCATATAACCACAACAATCCTCACCGGTCACCAAAACCCTAA 1428 0.4615 MGLGPDAIQVGNWEVGNSKGRKKKDDEEEATGCWIKFRFMGSCMSARSKVESSVSSSSTQYAESKSTNDTSRDQPVAPVVSSSTTSNGESTPSTPNTGEELKVASQLRKFTFNELKSATRNFRPESLLGEGGFGCVFKGWINGTGTTPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLLHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRALPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDVDYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLLDPRLEGRFSIKGAQKAAQLAAHCLSRDPKARPLMSEVVEALKPLPNLKDMASSSSFFQTMQAERTGSTPNSRSGIRAQAGFLSRNGQPNRSLSMPNGPHASPYNHNNPHRSPKP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1820 475 SUPERFAMILY Protein kinase-like (PK-like) 107 423 IPR011009 -
Vvi14g1820 475 PANTHER OS01G0588500 PROTEIN-RELATED 67 405 - -
Vvi14g1820 475 MobiDBLite consensus disorder prediction 51 99 - -
Vvi14g1820 475 MobiDBLite consensus disorder prediction 422 475 - -
Vvi14g1820 475 CDD STKc_IRAK 128 405 - -
Vvi14g1820 475 ProSiteProfiles Protein kinase domain profile. 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1820 475 FunFam Serine/threonine-protein kinase BIK1 89 207 - -
Vvi14g1820 475 FunFam Probable serine/threonine-protein kinase PBL8 208 423 - -
Vvi14g1820 475 Pfam Protein tyrosine and serine/threonine kinase 126 402 IPR001245 GO:0004672|GO:0006468
Vvi14g1820 475 MobiDBLite consensus disorder prediction 1 29 - -
Vvi14g1820 475 Gene3D Transferase(Phosphotransferase) domain 1 208 424 - -
Vvi14g1820 475 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Vvi14g1820 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vvi14g1820 475 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1820 Vvi-Chr14 29136631 29145418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1820 69 402 Glycoside Hydrolase AT3G07070 54.734 1.47e-117 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi14g1820 PK_Tyr_Ser-Thr 8.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1820 - - vvi:100853083 933.324