Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1813 ATGGCGTCCTCCATTATTATTTTTACAGCAGTGGTGGTAGTTACCATCACCAGTACCATGATGATAATGTTATTCCCCCTTGCCAATGCAATATCATCACCATCTTCATCAACTGATGAGGCAGAGGCTTTGCGCAGCACCGGTTGGTGGAATTCTACCTCTGCTCATTGCCACTGGGATGGTGTATTTTGCAATAATGCCGGAAGAGTGACTGGAATCGCCCTTTACGGTTCAGGAAAAGAATTGGGTGAGCTTAGCAAATTGGATTTTTCTTCATTTCCCAGCCTGGTTGAGCTCTCCCTTTCTGACTGTGGACTCAATGGTAGCATCCCACACCAAATAGGTACTCTTACTCAACTCACCTATCTTTCTCTCGGTCTTAACAATCTTACAGGTGAGCTACCTCTTTCCTTGGCTAACCTCACTCAGTTGGAGGTCCTTTCCTTTTATTCTAATCGACTACATGGTTCGATTCTTCCTGAAATTGGGAAAATGAAGAATTTGACTGTTTTGGATTTGGGTAATAACAACCTTACTGGTGTCATCCCTTCCTCTTTTGGTAATCTTACCAATCTGACATTTCTTTATCTTGATGGTAATAAAATAAGTGGTTTTATCCCTCCTCAAATTGGGAAATTGAAGAATCTGAGGTTTCTCTATCTTTCTTCTAACGGACTACATGGTCCAATTCCTCCTGAAATTGGGAAATTGAAGAATTTGGAGGTGCTTTATCTTTTTTATAACAAACTACATGGTCTAATTCCTCCTGAAATTGGGAATATGAAGAAATTGATTTTTTTGAATCTACGTAGTAACAACCTTACTGGTGTCATCCCTTCATCTTTTGGTAATCTTACCAATCTGAATTCTCTTACTCTTCGAGGTAATCAAATCAGTGGTTTTATTCCTCCTGAAATTGGGTATCTTTTGAATTTATCATATCTAGATCTCAGTGAGAATCAAATCAGTGGTTTCATCCCTGAAGAAATAGTGAATTTGAAGAAATTGGGTCATTTGGACATGAGTAATAACTTAATACGTGGAAAGATACCTTCACAATTGGGATATTTGAAAGAAGTAGAATACTTCAATCTCTCCCATAATAACCTCTCTGGCACAATTCCTCATTCTATTTCTAATAACTACATGTGGACGTCAATTGATTTATCACACAATCAGTTGGAGAGTCAGTCCACAACTCCACATGAGGCATTTGGCCACGACAAAGGTTTATGTGGTGGAATCAACGGTTTGTCGCATTGTAAGAAAAGACACCAAATCGTTCTCATCGTTGTTATTTCTTTATCTGCAACCTTGTTGCTTTCAGTTACAGCCCTTGGGTTTCTCTTCCATAAACAAAAGATAAGAAAAAATCAATTATCGAAGACAACAAAGGCAAAAAATGGAGATTTGTTTTCCATATGGGACTATGATGGTACGATTGCATATGATGACATCATCCAAGCAACTGAAGATTTTGACATCAAATACTGTATAGGCACCGGAGGCTATGGGAGTGTTTACAGAGCACAACTGCCTAGCGGAAAAGTGGTTGCCTTAAAAAAACTTCATAGTTGGGAAAGAGAGGATCCAACTTACCTGAAAAGCTTTGAAAATGAAGTTCAAATGTTATCAACAATACAACATCGTAATATTGTGAAACTTCATGGCTTTTGTCTACATAACAGATGCATGTTTCTCGTTTACAAATATATGGAAAAAGGAAGCTTGTATTGTATGTTGAGGGATGAAGTTGAGGTCGTGGAATTGGATTGGATTAAAAGGGTAAATGTTGTTAAAAGCATTGCTAGTGCTTTATCTTACATGCATCATGACTATGTCATGCCCATCATTCATCGAGACATATCAAGTAACAACATTTTGCTGGATTCTAAGCTTGAAGCTTGTGTATCGGATTTTGGCACTGCAAGACTGTTAGATCCCTACTCATCCAATCAAACCCTTCTTGTAGGCACTTACGGTTATATTGCACCAGAGCTTGCTTATACTATGGTTGTGACTGAAAAATGCGACGTTTATAGCTTTGGGATGGTTGCATTGGAGACAATGATGGGAATGCATCCAGGAGAACTTGTCACCTCATTATCATCTTCATCAACTCAAAACACAACATTAAAGGATGTATTAGATTCACGTCTTTCATCTCCTAAAAGTACAAGAGTTGCTAATAATGTAGCTCTTATTGTGTCATTGGCGCTCAAATGTCTCCATTCTAATCCACGTTTTCGTCCATCCATGCAAGAAGTGTCTTTGAAACTTGTTTCTACAAAGTCATTCCCACAACCCATCAGTGCAATATCACTTTTGCAACTAAAAGACGAAGTTATTTAA 2352 0.3827 MASSIIIFTAVVVVTITSTMMIMLFPLANAISSPSSSTDEAEALRSTGWWNSTSAHCHWDGVFCNNAGRVTGIALYGSGKELGELSKLDFSSFPSLVELSLSDCGLNGSIPHQIGTLTQLTYLSLGLNNLTGELPLSLANLTQLEVLSFYSNRLHGSILPEIGKMKNLTVLDLGNNNLTGVIPSSFGNLTNLTFLYLDGNKISGFIPPQIGKLKNLRFLYLSSNGLHGPIPPEIGKLKNLEVLYLFYNKLHGLIPPEIGNMKKLIFLNLRSNNLTGVIPSSFGNLTNLNSLTLRGNQISGFIPPEIGYLLNLSYLDLSENQISGFIPEEIVNLKKLGHLDMSNNLIRGKIPSQLGYLKEVEYFNLSHNNLSGTIPHSISNNYMWTSIDLSHNQLESQSTTPHEAFGHDKGLCGGINGLSHCKKRHQIVLIVVISLSATLLLSVTALGFLFHKQKIRKNQLSKTTKAKNGDLFSIWDYDGTIAYDDIIQATEDFDIKYCIGTGGYGSVYRAQLPSGKVVALKKLHSWEREDPTYLKSFENEVQMLSTIQHRNIVKLHGFCLHNRCMFLVYKYMEKGSLYCMLRDEVEVVELDWIKRVNVVKSIASALSYMHHDYVMPIIHRDISSNNILLDSKLEACVSDFGTARLLDPYSSNQTLLVGTYGYIAPELAYTMVVTEKCDVYSFGMVALETMMGMHPGELVTSLSSSSTQNTTLKDVLDSRLSSPKSTRVANNVALIVSLALKCLHSNPRFRPSMQEVSLKLVSTKSFPQPISAISLLQLKDEVI* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1813 783 ProSiteProfiles Protein kinase domain profile. 493 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1813 783 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 455 571 - -
Vvi14g1813 783 ProSitePatterns Tyrosine protein kinases specific active-site signature. 617 629 IPR008266 GO:0004672|GO:0006468
Vvi14g1813 783 SMART LRR_typ_2 189 213 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 285 307 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 357 381 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 261 284 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 237 260 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 165 188 IPR003591 -
Vvi14g1813 783 SMART LRR_typ_2 309 333 IPR003591 -
Vvi14g1813 783 ProSitePatterns Protein kinases ATP-binding region signature. 499 521 IPR017441 GO:0005524
Vvi14g1813 783 FunFam Leucine-rich repeat receptor-like protein kinase TDR 194 423 - -
Vvi14g1813 783 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Vvi14g1813 783 SUPERFAMILY L domain-like 45 396 - -
Vvi14g1813 783 Pfam Leucine rich repeat 309 346 IPR001611 GO:0005515
Vvi14g1813 783 Pfam Leucine rich repeat 239 298 IPR001611 GO:0005515
Vvi14g1813 783 Pfam Leucine rich repeat 167 226 IPR001611 GO:0005515
Vvi14g1813 783 SMART LRR_sd22_2 213 242 - -
Vvi14g1813 783 SMART LRR_sd22_2 141 161 - -
Vvi14g1813 783 SMART LRR_sd22_2 189 204 - -
Vvi14g1813 783 SMART LRR_sd22_2 165 186 - -
Vvi14g1813 783 SMART LRR_sd22_2 117 138 - -
Vvi14g1813 783 SMART LRR_sd22_2 309 335 - -
Vvi14g1813 783 SUPERFAMILY Protein kinase-like (PK-like) 475 758 IPR011009 -
Vvi14g1813 783 Gene3D Transferase(Phosphotransferase) domain 1 572 769 - -
Vvi14g1813 783 PRINTS Leucine-rich repeat signature 309 322 - -
Vvi14g1813 783 PRINTS Leucine-rich repeat signature 168 181 - -
Vvi14g1813 783 Pfam Protein kinase domain 497 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1813 783 Gene3D Ribonuclease Inhibitor 184 421 IPR032675 -
Vvi14g1813 783 Gene3D Phosphorylase Kinase; domain 1 452 571 - -
Vvi14g1813 783 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 27 186 - -
Vvi14g1813 783 FunFam MDIS1-interacting receptor like kinase 2 572 766 - -
Vvi14g1813 783 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 120 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1813 Vvi-Chr14 29078749 29081263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1813 90 665 Receptor kinase-like Gene Family AT4G08850 38.473 1.77e-137 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi14g1813 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1813 - - vvi:100244032 1509.58