Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1812 ATGGCTGCTGTGATTCAGCCATGCCCTCTCATCTCCCTGTTTTTTGTCTCCCTTTTTTCTATTCTTCATTTATCTTCTTGTCAACCCAATTCCCCTCGGAATATTGAAACTTTCTATCCGTTCCGGCCTCCTCCAAATCCAACAAATCCAATTCCCAATCCTCGAATTTCCCAACTATCAATTCCATCATCAAAGTCATCGTCAAGCTATGCTGTTGCTAAGGCAGTCGCTGTAACAGCAGCCACCACAATAGTTGTCTCCGGGTTGTTCTTCATTCTGTTCCAAAAGTACACGGTTGCACGGGGGAGAAGCCAGAAAGGTAAAAATGATCCACGAGGTGGAGGTGAAAATGTGGTGAGTCACATTGAGTTCTCACGATTCAATGGAAATCTAAATGGGCTGATTGTCGATGAGAATGGTTTGGACGTGCTTTATTGGAAGAAGCTTGAAGGTGATTACAGGAAGAATAGTTTCCCTAAACAGGCTCTACATAATCTGAAACATGAAGAAAAAAGGATGAGTCGGAATGGAGATGGGAGGGCGAAGTCTGAGCCTATACAAGAAATTCCTTTGCTACGAGGAAAGTCTTCAACTTCCTATGATGAAGTTCAAGAAGAAGTGGAAAATCTGAATTGGTTTTCTGCCCCCCCTCCTTCGTCACAATCTTCTGAGATTTCTCTTGAGGCTGTGGGAAAAACTGAATCAACAATTCAATCATCCACATCTCTCCCACCCCCACCACCTATATTGGCAATTCCACAGAAGCCAAGTGCTACTCCACCTCCCTCACCACCAATCCCAGCTAAGATAAATCCCATACCACCACCACCACCATCTCCCTCACCACCAATCCCAGCAAAGATAAATCCCATACCACCACCACCTCCCTCACCACCAATCCCAGCTAAGATAAATCCCATACCACCACCACCTCCCTCACCTAAGGCGGGTGGTTTTACTTCATCATCAAAAGAAGCCTCATCGGTGACCAAAGGGATGCCTAATGGCAGTAAACTAGGAGAGTCTTCATCTGGATATAGCAAGGCAGGGACTGGAAATGGTCGGGTGGCGCTGAAGCCATTGCATTGGGATAAAGTGAACACTAACGCCGATCATTCAATGGTGTGGCACAAAATTAATGGCGGTTCTTTCAGCTTCGATGGTGACCTCATGGATGCACTGTTTGGAAATGTTGCTGCTAATGGGAGATCTCCTCAGATAAACCATAACAACCCAAATGGTGCCAGCTCAATTCAATCGGCTCAGATTTTCATCCTTGATAGTCGAAAGTCCCAAAACACAGCAATTGTACTCCGATCTTTAGCAATCTCGCGAAAAGAGATCCTCAACGCACTCATTAAGGGCCAAGACCTGAATGCAGATGCTCTTGAAAAGCTTACAAAAATTGCCCCAACTAAAGAAGAAGAATCCCAAATCCTTGCATTCGAGGGAGACCCCACAAGACTGGCTGATGCTGAATCCTTCCTCTACCATATCCTAAAAGCTGTTCCATCAGCATTCATACGTCTTAGTGCCATGTTTTTCAGATCGAATTATGACTCAGAGATTCTCCATCTCAGGGAATGTTTACAAACACTTGAATTGGGTTGCAAAGAGCTTCGAACTCGTGGACTTTTCTTAAAACTTTTGGAAGCCATACTCGAGGCAGGCAATCGCATGAATGCTGGAACTTCCAGAGGGAATGCCCAAGCTTTTAACCTCGCTGCTCTTCAAAAGCTTTCTGATGTTAAAAGCACTGATGGAAAAACTACGTTACTTCACTTTGTTGTGGAAGAAGTAGTCCGTTCTGAGGGCAAACGTTGTGTTTTGAACCGAAATCGCAGCTTGAGTCACAGCAGCAACAGTAGCCTGTATTCTGAGAACTCGGCATCAAGAGAGGATAGAGAAAAGGAATACATAATGATTGGTTTACCAGTGGTAGGAAGCCTAAGTGCTGAATTCTCTAATGTAAAGAAAGTAGCTGAAATGGACTACAATGCCTTTGGTGGCGTATGTTCAACTCTCACAGCCCATTCCACTGAAATCAAGCAATTTGTGGCACCATTTGCCAACAGTGATGGAGGATTTTTGAGGAAGATGAAAAGTTTTCTCGAAGCAGCAGGCGAAGAATTAAGGGAGGTGAGAGAAGAGCAAACAAGGGTAATGGAGCTCTTAAGGAGAACAACAGAATATTATCAACCACGATCTTCAAAGAACAAAGAGGCAAGCCCGCTTCAATTATTTATTATAGTAAAAGATTTTCTGGGTATGGTTGATCAGGTCTGTGTTGATATTGCTCGAAATCTACAACGGAGGAAAACAACCACAGCAAGTTTGGGGCCATCATCAACAAAGTCACCACCATCAAGAATTCCAGTGAAGTTCCCAAACTTGCCGCCAAATTTCATGCCAGACAAGTCCAGGAACTCTTCTTCTAGTGATTCAGAAGATGAGTTCTGA 2460 0.4411 MAAVIQPCPLISLFFVSLFSILHLSSCQPNSPRNIETFYPFRPPPNPTNPIPNPRISQLSIPSSKSSSSYAVAKAVAVTAATTIVVSGLFFILFQKYTVARGRSQKGKNDPRGGGENVVSHIEFSRFNGNLNGLIVDENGLDVLYWKKLEGDYRKNSFPKQALHNLKHEEKRMSRNGDGRAKSEPIQEIPLLRGKSSTSYDEVQEEVENLNWFSAPPPSSQSSEISLEAVGKTESTIQSSTSLPPPPPILAIPQKPSATPPPSPPIPAKINPIPPPPPSPSPPIPAKINPIPPPPPSPPIPAKINPIPPPPPSPKAGGFTSSSKEASSVTKGMPNGSKLGESSSGYSKAGTGNGRVALKPLHWDKVNTNADHSMVWHKINGGSFSFDGDLMDALFGNVAANGRSPQINHNNPNGASSIQSAQIFILDSRKSQNTAIVLRSLAISRKEILNALIKGQDLNADALEKLTKIAPTKEEESQILAFEGDPTRLADAESFLYHILKAVPSAFIRLSAMFFRSNYDSEILHLRECLQTLELGCKELRTRGLFLKLLEAILEAGNRMNAGTSRGNAQAFNLAALQKLSDVKSTDGKTTLLHFVVEEVVRSEGKRCVLNRNRSLSHSSNSSLYSENSASREDREKEYIMIGLPVVGSLSAEFSNVKKVAEMDYNAFGGVCSTLTAHSTEIKQFVAPFANSDGGFLRKMKSFLEAAGEELREVREEQTRVMELLRRTTEYYQPRSSKNKEASPLQLFIIVKDFLGMVDQVCVDIARNLQRRKTTTASLGPSSTKSPPSRIPVKFPNLPPNFMPDKSRNSSSSDSEDEF* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1812 819 PANTHER FORMIN-RELATED 16 812 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi14g1812 819 MobiDBLite consensus disorder prediction 241 316 - -
Vvi14g1812 819 ProSiteProfiles Formin homology-2 (FH2) domain profile. 348 784 IPR015425 -
Vvi14g1812 819 Coils Coil 697 717 - -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 774 790 - -
Vvi14g1812 819 Gene3D Formin, FH2 domain 357 779 IPR042201 -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 167 182 - -
Vvi14g1812 819 SUPERFAMILY Formin homology 2 domain (FH2 domain) 361 773 - -
Vvi14g1812 819 SMART it6_source 348 773 IPR015425 -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 167 355 - -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 774 819 - -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 39 58 - -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 213 240 - -
Vvi14g1812 819 Pfam Formin Homology 2 Domain 356 758 IPR015425 -
Vvi14g1812 819 MobiDBLite consensus disorder prediction 317 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1812 Vvi-Chr14 29069039 29071592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1812 1 816 FH2 protein (formin) Gene Family AT1G70140 44.852 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1812 - - vvi:100249203 952.584