Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1797 ATGGGTTATTTGAATGGAGCTTCAAAGACCCTTAAATCACCCAAATATTTATCTCTCTTATGTCGGCATCGCTCTTCTGCATTCAGCCCATTCTCTCCTGTTACTGGATGCAACCCAGTAAAAGGTCTACTGGGTTGGCACCATTTCGGTTGGAGCCATACCTTCTGCTCTCGTTCTCTCCAGAACAGCAGAGACAGCAGTGTAGATTTAAGCCAATACCCGCCTGAAAGGATTCGCAACTTTTCGATTATCGCGCATGTCGATCATGGGAAGTCGACGCTGGCTGATCGGCTTTTGGAGCTCACTGGGACTATCAAGAGAGGGCATGGTCAGCCCCAGTATCTTGATAAATTGCAGGTAGAGAGAGAAAGAGGAATAACCGTTAAGGCTCAGACAGCAACTATGTTCCACAGGCACAACTTTGATGGACCTGATGTTACCATTGCACAAGAATCCCCTAGTTTTTTACTCAATCTTATTGATACACCTGGTCATGTGGATTTCAGCTATGAAGTATCAAGATCCCTTGCAGCTTGCCAGGGTGTCCTTTTAGTTGTTGATGCTGCCCAAGGTGTTCAGGCACAAACTGTTGCTAACTTTTATCTAGCTTTTGAATCCAATCTGACAATAATCCCTGTCATAAATAAAATTGACCAGCCAACAGCTGATCCAGATCATGTTAAAGCACAGTTAAAATCCATGTTTGATCTCAACCCAAGTGATGCTCTTTTAACATCTGCCAAGACAGGTCAAGGTCTTGAGCAGGTCCTCCCAGCAGTCATAGAGCGGATACCTCCACCTCCCGGGAAGAGTTGTTCACCTTTGCGTATGCTCTTGTTGGATTCATATTATGATGAATACAAAGGAGTTATCTGCCATGTGGCAGTTGTTGATGGTGCATTGCGCAAGGGGGATAAGATTTCATCTTCAGCAACTGGACATACTTATGAGGTTTTCGATGTTGGGATCATGCACCCTGAACTCAAATCTACTGGAGTTCTTTTAACTGGTCAAGTGGGATATGTTGTGAGTGGCATGCGTTCAACCAAAGAGGCACGTGTTGGAGATACTTTACATCATAACAAAAGCATCGTAGAGCCTCTTCCAGGTTTCAAACCTGCAAAACACATGGTATTTTCTGGTCTTTATCCGGCTGATGGCTCTGACTTTGAAGCACTTAACCATGCAATAGAAAGGCTGACATGCAATGATGCCAGTGTATCAGTTACTAAGGAGAGCAGCACAGCACTTGGTCTGGGTTTCAGGTGTGGTTTCTTAGGCTTACTTCACATGGATGTTTTCCATCAGCGGCTTGAACAGGAGTATGGAGCTCACATAATTTCTACTGTTCCTACTGTGCCATATATTTTTGAGTACTCCGATGGAAGCAAAATACAGGTCCAGAATCCTGCTGCATTAGCTTCAAATCCCGGTAAACGAGTAACAGCTTGTTGGGAACCTACAGTGATAGCTACAATTATTATTCCTAGTGAATATGTGGGGCCTGTTATTACACTTTGCTCTGAACGGAGAGGGGAGCAATTGGAGTACTCATTTATTGATAGCCAACGAGCGTTTATGAAGTATCGCTTACCTTTGCGGGAAATTGTCGTGGACTTTTACAATGAATTGAAGAGTATAACATCAGGGTATGCGTCATTTGATTACGAGGATGCAGAATATCAAGCCTCTGATTTGGTGAAACTGGACATCCTTTTGAATGGACAACCTGTTGATGCGATGGCAACCATTGTTCATAATTTGAAGGCACAACGTGTAGGTCGTGAACTAGTGGAGAAGCTGAAGAAATTTATTGACAGGCAAATGTTCGAGATAGTAATACAAGCTGCTATTGGATCAAAGATTATTGCGAGGGAGACGATTTCGGCCATGAGAAAGAATGTTCTTGCAAAGTGTTATGGTGGGGATGTTACTCGGAAGCGGAAGCTGTTGGAGAAGCAGAAGGAAGGAAAAAAGCGAATGAAGCGGGTTGGCTCTGTTGATATACCTCAGGAGGCATTTCATGAATTGCTGAAGGTTTCATAG 2046 0.437 MGYLNGASKTLKSPKYLSLLCRHRSSAFSPFSPVTGCNPVKGLLGWHHFGWSHTFCSRSLQNSRDSSVDLSQYPPERIRNFSIIAHVDHGKSTLADRLLELTGTIKRGHGQPQYLDKLQVERERGITVKAQTATMFHRHNFDGPDVTIAQESPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIIPVINKIDQPTADPDHVKAQLKSMFDLNPSDALLTSAKTGQGLEQVLPAVIERIPPPPGKSCSPLRMLLLDSYYDEYKGVICHVAVVDGALRKGDKISSSATGHTYEVFDVGIMHPELKSTGVLLTGQVGYVVSGMRSTKEARVGDTLHHNKSIVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSVTKESSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIFEYSDGSKIQVQNPAALASNPGKRVTACWEPTVIATIIIPSEYVGPVITLCSERRGEQLEYSFIDSQRAFMKYRLPLREIVVDFYNELKSITSGYASFDYEDAEYQASDLVKLDILLNGQPVDAMATIVHNLKAQRVGRELVEKLKKFIDRQMFEIVIQAAIGSKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1797 681 CDD LepA 79 267 - -
Vvi14g1797 681 FunFam Translation factor GUF1, mitochondrial 451 563 - -
Vvi14g1797 681 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 680 IPR006297 GO:0005525
Vvi14g1797 681 FunFam Translation factor GUF1, mitochondrial 270 368 - -
Vvi14g1797 681 Gene3D - 451 563 - -
Vvi14g1797 681 CDD EF4_III 376 451 - -
Vvi14g1797 681 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
Vvi14g1797 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 305 IPR027417 -
Vvi14g1797 681 Pfam GTP-binding protein LepA C-terminus 573 679 IPR013842 -
Vvi14g1797 681 Gene3D Elongation Factor G (Translational Gtpase), domain 3 369 450 - -
Vvi14g1797 681 NCBIfam small GTP-binding protein domain 79 256 IPR005225 GO:0005525
Vvi14g1797 681 FunFam Translation factor GUF1, mitochondrial 369 450 - -
Vvi14g1797 681 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 76 268 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 NCBIfam translation elongation factor 4 77 680 IPR006297 GO:0005525
Vvi14g1797 681 CDD lepA_C 486 565 IPR035654 -
Vvi14g1797 681 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 PRINTS GTP-binding elongation factor signature 123 131 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 PRINTS GTP-binding elongation factor signature 210 219 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 PRINTS GTP-binding elongation factor signature 158 168 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 FunFam Elongation factor 4 75 269 - -
Vvi14g1797 681 SUPERFAMILY EF-G C-terminal domain-like 377 454 IPR035647 -
Vvi14g1797 681 FunFam Translation factor GUF1, mitochondrial 565 639 - -
Vvi14g1797 681 Gene3D - 76 269 IPR027417 -
Vvi14g1797 681 SUPERFAMILY EF-G C-terminal domain-like 485 579 IPR035647 -
Vvi14g1797 681 Gene3D - 565 639 IPR038363 -
Vvi14g1797 681 Pfam Elongation factor G C-terminus 486 571 IPR000640 -
Vvi14g1797 681 Pfam Elongation factor Tu GTP binding domain 77 265 IPR000795 GO:0003924|GO:0005525
Vvi14g1797 681 CDD EF4_II 275 360 - -
Vvi14g1797 681 Hamap Elongation factor 4 [lepA]. 74 681 IPR006297 GO:0005525
Vvi14g1797 681 Gene3D Translation factors 271 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1797 Vvi-Chr14 28927206 28934006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1797 78 219 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 5.36e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1797 K21594 - vvi:100250775 1352.81