LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi14g1796	ATGTATAGAAGTGGAAGAAGGGAGGAGGGGGACAAAGGGATAGGAGTTGACAAGAGCCAAAAGATAGAGAGACCAGCTAGCTTTGAAGGTGCAGCCATGGAGTCCATTGCCCATGAAGAGGCTGGAAAGGAGGATGAACTAGACTCGGCCAAAGCTGAAATGGGGGAGGTGAGAGAAGAAAATGAGAGACTAAAGACCATGTTGGAGAAAATTGGGAAGGATTATAAGTCTCTTCAACTGCAGGTTTTTGACATTCTTCAACAAGAATCCTCCAAGAGGCCTGTGGATTCAGCTCCTGCCATTGATGAAGAATCCAAAGAACTCGAACTAGTTTCCCTTTGCCTTGGAAGAAGTAGTCCAACTGATGGTAAAAGAGATGGTAAGTCCAGCATCGCTAGCAAGGCCAAGGAAGACGACGATGAGCTGAATGCTGGTCTCACCCTTGGTTTAGACTCAAAATTTCAAGTGTCTAAACTGGATGTGACAGAGTTTGCGTCCAACTCGAGTCCAACCGAGAATAGTATCGAGGAGGTGAAGGAAGAGGAAGCTGGGGAGACATGGCCTCCCAGTAAAGTTTTGAAGACAATGAGAACCGGAGATGAGGTTTCACAGCAGTCCCATGTGAAGAGAGCCAGGGTTTCAGTTAGAGCTCGATGTGACACGCTAACGATGAATGATGGGTGCCAATGGAGGAAATATGGACAGAAAATAGCTAAGGGGAATCCATGCCCACGAGCTTATTATCGGTGTACAGTTGCACCATCTTGCCCAGTGAGAAAGCAGGTGCAGAGATGTGCAGAGGACATGTCCATTTTGATCACTACCTATGAAGGAACTCACAACCACCCACTTCCGATGTCAGCCACAGCCATGGCTTCCACCACCTCTGCTGCAGCTTCCATGCTCATCTCCGGCTCTTCTGCCTCTCAGCCAGGCCTTGGTTCCTCACCTGCTGCTACTGAGCTCCATGGGTTGAACTTCAGTCTCCCTGATAATATGAGAACAAGGCAGCTCTATGCAGCAAACTCTTCCCCATTTCCAACTATTACTCTAGACCTCACCACTACAGCTTCATCATCCTCTCATTTCAGCAGGTTTTCCTCAAGCTTCAATTCTAGCACCCCAAGGTTCCCGTCAACAAGTCTTAGCTTTTCTTCCTCAGAATCCAACAGTGTACCTACAGTTTGGGGCAATGGGTGCCTTAATTATGGCATACTACCACATAATAAAGCTCAAATAGGGTCTCTAAATCTTGGAAGACAACCACCAGAACATTTTCATCAACCCTACATGGAAAAGAACGGCCAAGCACCTATTCAACAGTCCTTAACTGAAACATTGACCAAGGTGATAACATCAGACCCAAGTTTTCGGACAGTTATAGCTGCGGCGCTCTCATCAATGGTTAGCAGCAGTACCGGCCAACCAAACCCAGGTGCAGGAGAGAGCTTGGGCCAGAATTTGAAGTGGGGTGAGACTACTCAGGCCATTTCTACCAACCCATTGAGCCAGAATGGGAAGGGATGTGCACCTGGGTACTTAAATGCGTCATCATCTTCAAATTCTCAGACAGGAAACTCCATCCTCCTCCAGCCTCCATTTCCAGTTTCCATCCCTAGAAGTGGTACTTCTGGGTCTGCTGCTGAGAACAGGGACCAGAACAACTGA	1668	0.4766	MYRSGRREEGDKGIGVDKSQKIERPASFEGAAMESIAHEEAGKEDELDSAKAEMGEVREENERLKTMLEKIGKDYKSLQLQVFDILQQESSKRPVDSAPAIDEESKELELVSLCLGRSSPTDGKRDGKSSIASKAKEDDDELNAGLTLGLDSKFQVSKLDVTEFASNSSPTENSIEEVKEEEAGETWPPSKVLKTMRTGDEVSQQSHVKRARVSVRARCDTLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCAEDMSILITTYEGTHNHPLPMSATAMASTTSAAASMLISGSSASQPGLGSSPAATELHGLNFSLPDNMRTRQLYAANSSPFPTITLDLTTTASSSSHFSRFSSSFNSSTPRFPSTSLSFSSSESNSVPTVWGNGCLNYGILPHNKAQIGSLNLGRQPPEHFHQPYMEKNGQAPIQQSLTETLTKVITSDPSFRTVIAAALSSMVSSSTGQPNPGAGESLGQNLKWGETTQAISTNPLSQNGKGCAPGYLNASSSSNSQTGNSILLQPPFPVSIPRSGTSGSAAENRDQNN*	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	165	188	-	-
	Vvi14g1796	555	SUPERFAMILY	WRKY DNA-binding domain	217	285	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi14g1796	555	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	38	477	IPR044810	GO:0003700
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	1	61	-	-
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	121	140	-	-
	Vvi14g1796	555	Coils	Coil	33	81	-	-
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	513	555	-	-
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	36	61	-	-
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vvi14g1796	555	Gene3D	WRKY domain	209	286	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vvi14g1796	555	FunFam	probable WRKY transcription factor 31	209	286	-	-
	Vvi14g1796	555	ProSiteProfiles	WRKY domain profile.	219	285	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi14g1796	555	Pfam	WRKY DNA -binding domain	225	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi14g1796	555	SMART	WRKY_cls	224	284	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vvi14g1796	555	MobiDBLite	consensus disorder prediction	116	140	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi14g1796	Vvi-Chr14	28923754	28926499	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi14g1796	54	528	WRKY Transcription Factor Family	AT5G15130	45.731	1.62e-109	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vvi14g1796		WRKY	3.6e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi14g1796	-		-	vvi:100255935	1013.06