Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1789 ATGGAGATGATGAGGGTGAAGAGTGAAGAAAACCTGGGAAGGCGCCGCATGTGTGTGGCAGATGCTGAAGCTCAAGGGACACGCTGTGTCAAGAGACGACGAAGAGATCCAGCTATAGTCACACTTGGTTGTGATGATCAAAGTCAGCAACAGCAGCTGCCAAACCAACAACCTGATCAAGCATCTGCTGCTACCACTGTGAAGAGAAGTTCAAGATTTCGCGGTGTCAGCAGGCATAGATGGACAGGTCGGTTTGAAGCTCACTTGTGGGATAAGTTTTCTTGGAATGTAACACAGAAGAAGAAAGGGAAACAAGGAGCCTATGATGAAGAAGAATCTGCAGCCAGAGCATATGATTTAGCTGCACTCAAGTATTGGGGGGCATCAACTTTCACGAATTTTCCGGTTTCAGATTATGAGAAAGAGATTGAGATAATGCAGTCGGTGACAAAAGAAGAGTACCTAGCCTGTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGGGGTGTGTCTAAGTACAGGGGAGTAGCAAGGCATCATCACAATGGGAGATGGGAAGCAAGGATTGGGAGAGTTTTCGGAAATAAATACCTCTACCTTGGCACATACAGTACACAAGAGGAGGCTGCTCGAGCCTATGATATTGCAGCAATCGAATACAGAGGGATCAATGCTGTGACCAACTTTGATTTGAGCACATATATCAGGTGGCTAAATCCAGCAGCAAACAACCCAGTTGTGCCTCATGAGTCTCGAGCAAACACAGAGCCTCAAGCATTGGCATCCTCCAACTTTGTCCTGAGTGAAGAATCAGAACCCTTGTTTTTCCACAGCAACTCTTTCACCATGGATGATCTCAACCCTCCTCATAAACAAGAAGTATTCCAGACAAAAATCCCTATAGAACCATGCAGCAAGTCTTCCTCTCCCACTGCGCTTGGGTTGCTGCTTCGGTCTTCAATATTCAGGGAACTGGTGGAGAAGAATTCAAATGCCCCTGAAGATGAAACTGATGCAGAAGACACAAAGAACCAACAGCAGGTAGGAAGTGATGATGAGTATGGGATCTTCTATGATGGGATTGGCGATATCCCATTTGTGTGCCCTTCGAATGGTGACCGTAATGAGTTGCAAGAAAGACTTCCACTTCCATTCACAATCAGTCAAGGAAATCCCTATGGAACAGCAGTATTAACAAGCATGCAATCCATCAACTAA 1215 0.4551 MEMMRVKSEENLGRRRMCVADAEAQGTRCVKRRRRDPAIVTLGCDDQSQQQQLPNQQPDQASAATTVKRSSRFRGVSRHRWTGRFEAHLWDKFSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGASTFTNFPVSDYEKEIEIMQSVTKEEYLACLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLNPAANNPVVPHESRANTEPQALASSNFVLSEESEPLFFHSNSFTMDDLNPPHKQEVFQTKIPIEPCSKSSSPTALGLLLRSSIFRELVEKNSNAPEDETDAEDTKNQQQVGSDDEYGIFYDGIGDIPFVCPSNGDRNELQERLPLPFTISQGNPYGTAVLTSMQSIN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1789 404 CDD AP2 71 137 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 Pfam AP2 domain 71 127 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 Pfam AP2 domain 170 221 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 MobiDBLite consensus disorder prediction 328 349 - -
Vvi14g1789 404 SUPERFAMILY DNA-binding domain 71 137 IPR016177 GO:0003677
Vvi14g1789 404 SMART rav1_2 72 141 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 SMART rav1_2 171 235 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 ProSiteProfiles AP2/ERF domain profile. 171 229 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 FunFam AP2-like ethylene-responsive transcription factor 170 231 - -
Vvi14g1789 404 CDD AP2 170 231 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 Gene3D AP2/ERF domain 71 137 IPR036955 GO:0003700|GO:0006355
Vvi14g1789 404 Gene3D AP2/ERF domain 170 231 IPR036955 GO:0003700|GO:0006355
Vvi14g1789 404 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 51 255 - -
Vvi14g1789 404 MobiDBLite consensus disorder prediction 328 346 - -
Vvi14g1789 404 ProSiteProfiles AP2/ERF domain profile. 72 135 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 MobiDBLite consensus disorder prediction 45 69 - -
Vvi14g1789 404 SUPERFAMILY DNA-binding domain 170 231 IPR016177 GO:0003677
Vvi14g1789 404 PRINTS Ethylene responsive element binding protein signature 211 231 IPR001471 GO:0003700|GO:0006355
Vvi14g1789 404 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1789 Vvi-Chr14 28882606 28884535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1789 68 302 AP2-EREBP Transcription Factor Family AT5G57390 55.556 2.65e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi14g1789 AP2 4.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1789 - - vvi:100254153 802.357