Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1788 ATGTCGGAGGGTCATCTCTTCAACAATATCTCTCTCGGCGGTCGCGGTGGAACGAATCCAGGGCAGTTGAGGGTTCATCCAGGAGGGATATTATGGAAAAAGCAAGGAGGTGGAAAGGCTGTTGAGGTTGACAAATCTGATATTGTCGGGGTGACCTGGATGAAAGTCCCAAGAACTAATCAGCTTGGTGTTCGAGTTAAAGATGGGTTATACTACAAATTCACTGGTTTCCGTGAGCAGGATGTCACTAATTTGACCAATTTTTTCCAACATTCTTGTGGATTAAACCCAGAAGAGAAGCAGCTTTCTGTGAGTGGCCGCAACTGGGGAGAAGTTGATTTAAATGGCAATATGCTGACTTTTCTGGTTGGTTCGAAGCAAGCATTTGAAGTATCTTTAGCAGATGTTTCACAGACACAGATGCAAGGGAAAAATGATGTCATTTTGGAGTTCCACGTGGATGATACAACTGGGGCTAATGAGAAAGATTCATTGATGGAGATAAGCTTTCACATACCAAATTCCAATACCCAATTTGTTGGTGATGAAAATCGTCCTCCAGCTCAAGTATTCCGTGATAAAATTATGTCAATGGCGGATGTTGGTGCTGGAGGTGAAGAAGCAGTTGTTACATTTGAGGGGATTGCGATTCTTACACCAAGGGGACGGTACAGTGTGGAACTGCATTTGTCATTCCTACGCCTGCAGGGTCAGGCTAACGATTTTAAAATTCAATACAGCAGTGTCGTTCGCCTTTTCTTACTACCTAAGTCTAACCAGCCACATACCTTTGTTGTTGTGACACTGGATCCACCAATCCGTAAAGGGCAGACTTTGTATCCACATATTGTGATGCAGTTTGAAACAGACTATGTGGTTCAAAGTGAATTGTCATTAAGTGAAGAACTTTTGAATAGCAAGTACAAGGACAAGTTGGAGCCTTCATATAAGGGACTCATTCATGAAGTCTTCACCTTGATATTGCGTGGCTTATCTGGTGCCAAGGTCACAAAACCAGGGAAATTCCGGAGCTGTCAGGATGGTTATGCAGTGAAGTCATCATTGAAAGCTGAAGATGGTGTTTTGTATCCACTAGAAAAGAGCTTCTTCTTTTTACCCAAGCCTCCTACCCTTATTCTTCATGAGGAGATTGACTATGTTGAGTTTGAGAGGCATGCTGCTGGAGGCTCAAATATGCATTACTTTGATCTTCTTATAAGACTAAAGACTGAACAAGAACATCTCTTCCGGAATATTCAGAGGAATGAATACCATAATCTTTTTGACTTTATCAGTGGGAAAGGCTTGAAAATTATGAATCTTGGAGATGTCCAAACCGCAGATGGTGTTGCTGCTGTTCTTCAGAATGATGATGATGATGCTGTTGACCCACATCTTGAGCGGATTAAGAATGAAGCTGGTGGAGATGAGAGTGATGAAGAGGATGAAGATTTTGTTCTTGACAAGGACGACGGAGGCTCTCCTACTGATGATTCTGGGGAAGAGGAATCTGATGCTAGTGAAAGTGGAGGCGAGAAAGAAAAGCCTTCCAAAAAGGAATCCAAGAAAGAGCCTTCTGTTTCTAAGGCATCTTCGTCTAAGAAGAAACCCAAAGATGGAGATGAAGATGGTTCAAAGAAGAGAAAACAGAAGAAGAAAAAGGATCCAAATGCGCCAAAGAGGGCTATGTCTGGTTTCATGTTCTTTTCACAAACTGAAAGGGAGAATATAAAGAAAAGTACTCCTGGAATTGCATTCACTGAGGTGGGGAGAGTTCTTGGTGATAAGTGGAAAAAGATGACAGCGGAGGAGAAAGAACCCTACGAAGCGAAAGCTCAAGCAGATAAGAAACGATACAGGGATGAAATTAGCGGCTACAAGAGCAACCCACAACCCATGAACGTAGACTCCGGGAATGAATCCGACAGTGAATAG 1935 0.4264 MSEGHLFNNISLGGRGGTNPGQLRVHPGGILWKKQGGGKAVEVDKSDIVGVTWMKVPRTNQLGVRVKDGLYYKFTGFREQDVTNLTNFFQHSCGLNPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVMQFETDYVVQSELSLSEELLNSKYKDKLEPSYKGLIHEVFTLILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDVQTADGVAAVLQNDDDDAVDPHLERIKNEAGGDESDEEDEDFVLDKDDGGSPTDDSGEEESDASESGGEKEKPSKKESKKEPSVSKASSSKKKPKDGDEDGSKKRKQKKKKDPNAPKRAMSGFMFFSQTERENIKKSTPGIAFTEVGRVLGDKWKKMTAEEKEPYEAKAQADKKRYRDEISGYKSNPQPMNVDSGNESDSE* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1788 644 Gene3D High mobility group box domain 543 641 IPR036910 -
Vvi14g1788 644 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Vvi14g1788 644 MobiDBLite consensus disorder prediction 599 644 - -
Vvi14g1788 644 FunFam FACT complex subunit SSRP1 543 636 - -
Vvi14g1788 644 Gene3D - 96 179 IPR038167 -
Vvi14g1788 644 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 559 627 IPR009071 -
Vvi14g1788 644 FunFam FACT complex subunit SSRP1 1 93 - -
Vvi14g1788 644 Gene3D - 1 92 IPR011993 -
Vvi14g1788 644 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Vvi14g1788 644 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Vvi14g1788 644 FunFam Fact complex subunit ssrp1 199 338 - -
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Vvi14g1788 644 SUPERFAMILY PH domain-like 206 440 - -
Vvi14g1788 644 MobiDBLite consensus disorder prediction 468 581 - -
Vvi14g1788 644 Pfam HMG (high mobility group) box 559 627 IPR009071 -
Vvi14g1788 644 MobiDBLite consensus disorder prediction 506 549 - -
Vvi14g1788 644 CDD HMG-box_AtSSRP1 555 628 - -
Vvi14g1788 644 SMART Rtt106_2 348 441 IPR013719 -
Vvi14g1788 644 Gene3D - 339 448 IPR011993 -
Vvi14g1788 644 SUPERFAMILY HMG-box 550 634 IPR036910 -
Vvi14g1788 644 MobiDBLite consensus disorder prediction 627 644 - -
Vvi14g1788 644 Gene3D - 199 338 - -
Vvi14g1788 644 SMART hmgende2 558 628 IPR009071 -
Vvi14g1788 644 CDD PH2_SSRP1-like 342 441 - -
Vvi14g1788 644 FunFam FACT complex subunit SSRP1 96 179 - -
Vvi14g1788 644 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 613 - -
Vvi14g1788 644 FunFam FACT complex subunit SSRP1 339 447 - -
Vvi14g1788 644 CDD PH1_SSRP1-like 207 340 - -
Vvi14g1788 644 MobiDBLite consensus disorder prediction 599 624 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1788 555 627 ARID Transcription Factor Family AT1G04880 36.986 3.26e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vvi14g1788 Rtt106 5.7e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1788 K09272 - vvi:100249277 1194.1