Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1787 ATGGGGGCATATAAGTTCAGTAGTCTTTTGTTGTTGTCTTTCTTTGCATTTGCTGTGTTGGCTCCGTCGATTCGAGCCCACATCGGAGAATTTGATGAGGTGTGGCAGAAGCGAGCTGAGGAGGCCCAGAAGGCTGCATTGGAGGCCTATCAACCGAACCCGGAAGAGGTCACCAACCAGTTCAACAAGAATGTCCGCAAGTCCATGCAGGGAACCAACACAACGAGGAGGAACTTGAGGAGTAACAATGGTCCATGCATGGCCACGAACCCTATCGACAGGTGCTGGAGATGCAAGCAGGACTGGGCTAAAAACCGAAAGAAGCTAGCTGACTGTGTGCTGGGGTTCGGGCGCAGGACTACAGGAGGAAAGGATGGAGAATTCTATGTGGTAACTGATGCCTCAGACAATGACATGATCGACCCAAAACCCGGTACTCTTCGCCATGCTGTGATCCAGAAGGAGCCACTGTGGATCATATTTGCCCGCGACATGATAATAAGGTTGAAACAGGAGCTGATCATGGCTGGCAACAAGACCATCGATGGCCGTGGGGCTAATGTTCACATTGCATATGGTTGTGGCATTACTATACAGTTTGTGAAGAATATCATCATCCATAACCTCCATATACATGACATTGTTCCTGCTCAAGGTGGGATGATTAGAGACTCTGTAGATCATTATGGCCTCAGAACTGCCAGTGATGGAGATGGGGTTTCGATATTCGGCTCATCCAACGTCTGGGTGGATCATCTCTCCATGTCCAACTGCAAGGATGGGCTTGTTGATGTGATCATGGCATCCACAGCCATCACCATTTCAAACTGCCATTTCACTAATCACAATGAGGTGATGCTGTTTGGTGGCAGCAATAATTTCCAGGGCGATAAGATCATGCAAGTGACAGTGGCATTCAACCATTATGGAAGAGGACTAGTCCAGAGAATGCCAAGATGCAGATATGGCTTCGTCCATGTTGTCAACAACGATTACACTCACTGGCTCATGTATGCCATTGGTGGTAGCCAGAACCCCACCATCATAAGCCAGGGGAACCGGTTCATCGCCCCTCCAAATATGGCTTGCAAGGAGGTAAACAAAAAATGGTAG 1113 0.4852 MGAYKFSSLLLLSFFAFAVLAPSIRAHIGEFDEVWQKRAEEAQKAALEAYQPNPEEVTNQFNKNVRKSMQGTNTTRRNLRSNNGPCMATNPIDRCWRCKQDWAKNRKKLADCVLGFGRRTTGGKDGEFYVVTDASDNDMIDPKPGTLRHAVIQKEPLWIIFARDMIIRLKQELIMAGNKTIDGRGANVHIAYGCGITIQFVKNIIIHNLHIHDIVPAQGGMIRDSVDHYGLRTASDGDGVSIFGSSNVWVDHLSMSNCKDGLVDVIMASTAITISNCHFTNHNEVMLFGGSNNFQGDKIMQVTVAFNHYGRGLVQRMPRCRYGFVHVVNNDYTHWLMYAIGGSQNPTIISQGNRFIAPPNMACKEVNKKW* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1787 370 PANTHER PECTATE LYASE 18-RELATED 42 369 IPR045032 GO:0030570
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Vvi14g1787 370 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Vvi14g1787 370 Pfam Pectate lyase 172 355 IPR002022 -
Vvi14g1787 370 Gene3D - 89 370 IPR012334 -
Vvi14g1787 370 SMART amb_all 164 361 IPR002022 -
Vvi14g1787 370 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Vvi14g1787 370 SUPERFAMILY Pectin lyase-like 79 366 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1787 Vvi-Chr14 28869048 28870393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1787 11 369 Polysaccharide Lyase AT5G15110 59.137 4.26e-172 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1787 K01728 - vvi:100254377 736.102