Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1782 ATGGGAAAAATGGAGTGTGTGGTATCTAGTGTTGTGGCGGTGCTGCTGCTGCTGGTGGTGCACACGGTGTCAATGACTCATGCTGCTTCAACTCATTCATCTACTGATCACTCACAGGTTGTGGCTGAGGCTGACGCTCTGCGCAACTCCGGTTGGTGGATATGGAGCCACCCAGCTACCTCTAACCATTGCAGTTGGTCGGGCATAACTTGTAATGAGGCCAAACATGTCACTGAGATAAGCCTACACGGTTACCAAGTACTCCTACCCCTGGGTGAGCTTAGTAAATTAAATCTTTCTTCACTTCCCAGCCTCAATTTTCTCATCCTTTCTGGAATGGGACTCAATGGTAGCATATCAGACGAAATAGGTAGTCTTACTAAACTCACCCATCTTGATCTTTCTTATAATCAACTCAATGGTAACATCCCACAACAAATGTATACTCTCACAGAACTCACCCATCTTGATCTTTCTTCTAATCAAATGACTGGCCCCATCCCACACCAAATAGGTACTCTTACAGAACTCATCTTCCTTCACCTCTCTGGGAATGAACTCACTGGTGCCATCCCTTCATCTTTTGGCCGTCTTACTAAACTCACCCATCTTGATCTTTCTTCTAATCAACTGACTGGCCCCATCCCACACCCAATAGGTACTCTTACAGAACTCATCTTCCTTCACCTCTCTTGGACTGAACTCACTGGTGCCATCCCTTCATCTTTAGGCCATCTTACTAAACTCACCCACCTTGATCTTTCTTATAATCAACTCAATGGTAGCATCTCACACCAAATGTATACTCTCACAGAACTCACCCATCTTGATCTTTCTAATAATCAACTCAGTGGTAGCATCCCACACCAAATAGGTACTCTCACAGAACTCACCTACCTTGACCTCTCTTGGAGTGAACTCACTGGTGCCATGCCTTCATCTTTAGGCTCTCTCACTAAGTTGACTTCTTTGAACCTTTGTATGAATCAAATAAATGGATCTATCCCTCCAGAAATTGGAAATATTAAGGATCTAGTCTCTTTGGACCTTCATCGTAACTTAATCAGTGGAGAGATACCTTCCAAGCTAAAAAAATTAAAGAGATTAGAGTGCTTAGATCTCTCGTATAATAGACTATCAGGCAAAATCCCGCCCTTTCTCACCAACAATAGCGACTGGGAGAAACTTGATTTATCCCACAATGATGATTTGGAGGGTTATACACCTTTCGTTCACAATGGAGGAGAGAAGACGGGTGCCCAAGTTCCAACCAGAGACACAACATCCCAGCACACCATTATCACCCCTTTGCTCCTCACCTTGGTTTTTGTAACCTTAATACTTGGGTTAGCCTGCCTTTGGTGGAAGAAAAGAAAAGTTCAACCAGAGTCAATGGCAACCAAAAAAAATGGAGATTTATTTTCCATATGGGACTATGATGGGAGAATTGCTTTTGAAGACATCATCTCGGCAACAGAGGATTTCGATATCAGATATTGCATAGGCGTTGGAGGCTATGGCAGTGTTTATAGAGCACAACTTCCCAGTGGAAACGTGGTTGTTGTGAAGAAACTTCATCGATCAGAAATAGATGAGCCGACATACTTGAGAAGTTTTAAGAATGAGGTACAGATGTTAGAAGAAATACGGCATCGGAACATTGTGAAATTGCATGGTTATTGTCTACATAATAGATGCATGTTTCTCATTTGTATGTACATGGAAAGGGGAAGTTTGAATTGTATGCTGAGCAATGAGGTTGAGGCTGTTGAATTGGATTGGGTTAAAAGGGTGAATATTGTTAAAAATATGGCCCATGCATTATCCTACATGCATCATGATTGTACCCCACCAATCATTCATCGGGACATATCAAGCAATAATATTCTTTTAGATTCAAAACTTGAGGGTTTTGTATCAGATTTTGGTACAGCGAGATTATTAGACCCCAGTTCGTCCAATCAAACCCTTATTGCTGGCACCTATGGCTACATTGCACCGGAGTTTGCCTACACAATGATTGTGACCGAAAAATGTGATGTGTATAGCTTTGGGGTGGTGGCACTAGAGACAATGATAGGAAAGCATCCTGGAGAACTAATCACCTCATTATTATCGTCATTATGCCAAGATATAATGTTGAGGGATGTATTAGATTCACGCCTTTCACTTCCTGAAGATCTACAAGTTGCTAAAGATGTAGTTTTCGTGGTCCTTTTAGCTCTCAAATGCATCCATCCAAATCCACAATCTCGTCCAACAATGCAACAAATATCCTATAAACTTCTTGGTAACATACCATTTCCTAAGTCGCCCTTTTATGCAATTTCCCTCCATGAATTGAAGAATCAAGAAATGTAA 2361 0.4172 MGKMECVVSSVVAVLLLLVVHTVSMTHAASTHSSTDHSQVVAEADALRNSGWWIWSHPATSNHCSWSGITCNEAKHVTEISLHGYQVLLPLGELSKLNLSSLPSLNFLILSGMGLNGSISDEIGSLTKLTHLDLSYNQLNGNIPQQMYTLTELTHLDLSSNQMTGPIPHQIGTLTELIFLHLSGNELTGAIPSSFGRLTKLTHLDLSSNQLTGPIPHPIGTLTELIFLHLSWTELTGAIPSSLGHLTKLTHLDLSYNQLNGSISHQMYTLTELTHLDLSNNQLSGSIPHQIGTLTELTYLDLSWSELTGAMPSSLGSLTKLTSLNLCMNQINGSIPPEIGNIKDLVSLDLHRNLISGEIPSKLKKLKRLECLDLSYNRLSGKIPPFLTNNSDWEKLDLSHNDDLEGYTPFVHNGGEKTGAQVPTRDTTSQHTIITPLLLTLVFVTLILGLACLWWKKRKVQPESMATKKNGDLFSIWDYDGRIAFEDIISATEDFDIRYCIGVGGYGSVYRAQLPSGNVVVVKKLHRSEIDEPTYLRSFKNEVQMLEEIRHRNIVKLHGYCLHNRCMFLICMYMERGSLNCMLSNEVEAVELDWVKRVNIVKNMAHALSYMHHDCTPPIIHRDISSNNILLDSKLEGFVSDFGTARLLDPSSSNQTLIAGTYGYIAPEFAYTMIVTEKCDVYSFGVVALETMIGKHPGELITSLLSSLCQDIMLRDVLDSRLSLPEDLQVAKDVVFVVLLALKCIHPNPQSRPTMQQISYKLLGNIPFPKSPFYAISLHELKNQEM* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1782 786 ProSiteProfiles Leucine-rich repeat profile. 368 390 IPR001611 GO:0005515
Vvi14g1782 786 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 273 418 - -
Vvi14g1782 786 FunFam Leucine-rich repeat receptor protein kinase EMS1 193 272 - -
Vvi14g1782 786 SUPERFAMILY Protein kinase-like (PK-like) 478 760 IPR011009 -
Vvi14g1782 786 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 234 763 - -
Vvi14g1782 786 Gene3D Phosphorylase Kinase; domain 1 457 573 - -
Vvi14g1782 786 SMART LRR_sd22_2 246 261 - -
Vvi14g1782 786 SMART LRR_sd22_2 150 176 - -
Vvi14g1782 786 SMART LRR_sd22_2 126 145 - -
Vvi14g1782 786 SMART LRR_sd22_2 270 296 - -
Vvi14g1782 786 SMART LRR_sd22_2 366 398 - -
Vvi14g1782 786 SMART LRR_sd22_2 198 224 - -
Vvi14g1782 786 ProSitePatterns Tyrosine protein kinases specific active-site signature. 619 631 IPR008266 GO:0004672|GO:0006468
Vvi14g1782 786 Pfam Leucine Rich repeat 153 165 IPR001611 GO:0005515
Vvi14g1782 786 Pfam Leucine Rich repeat 126 141 IPR001611 GO:0005515
Vvi14g1782 786 FunFam MDIS1-interacting receptor like kinase 2 574 767 - -
Vvi14g1782 786 FunFam Leucine-rich repeat receptor protein kinase MSP1 456 573 - -
Vvi14g1782 786 Pfam Leucine Rich repeats (2 copies) 175 211 IPR025875 -
Vvi14g1782 786 SMART LRR_typ_2 246 265 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 318 342 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 198 229 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 366 390 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 126 150 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 174 197 IPR003591 -
Vvi14g1782 786 SMART LRR_typ_2 270 294 IPR003591 -
Vvi14g1782 786 PRINTS Leucine-rich repeat signature 366 379 - -
Vvi14g1782 786 PRINTS Leucine-rich repeat signature 273 286 - -
Vvi14g1782 786 ProSiteProfiles Protein kinase domain profile. 495 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1782 786 Pfam Leucine rich repeat 228 283 IPR001611 GO:0005515
Vvi14g1782 786 ProSiteProfiles Leucine-rich repeat profile. 272 294 IPR001611 GO:0005515
Vvi14g1782 786 FunFam Nuclear pore complex protein NUP107 40 192 - -
Vvi14g1782 786 Gene3D Ribonuclease Inhibitor 191 418 IPR032675 -
Vvi14g1782 786 Pfam Protein kinase domain 500 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi14g1782 786 ProSitePatterns Protein kinases ATP-binding region signature. 501 524 IPR017441 GO:0005524
Vvi14g1782 786 Gene3D Transferase(Phosphotransferase) domain 1 574 766 - -
Vvi14g1782 786 SUPERFAMILY L domain-like 62 404 - -
Vvi14g1782 786 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1782 Vvi-Chr14 28805445 28808672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1782 115 667 Receptor kinase-like Gene Family AT4G08850 37.778 3.99e-129 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi14g1782 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1782 - - vvi:100256082 1526.92