Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1772 ATGGCTGATCACTTGGCACTCTACTCTAATCGCCTCATCACACCCCCTACTTTGGATCTGATGCACAAAGAAGAGGAGAAAAGACTAGACGGAGAAGGCTCCTCCCAACAGACAGCTGAGCTCAACTCTAACTGGGCAATGGACGGATACAGCTTCTCTGACGAAGAAGATGGGTTCAGCATAAAAACTGAATGTCGCATTTGTCAGGAAGACGATCACGTCCAAAACATGGAGGCCCCTTGTGCTTGTAATGGAAGCTTAAAGTATGCCCACAGAAAATGCATCCAGAGGTGGTGCAATGAAAAGAAAAGCATCGTCTGTGAAATATGCCAACAGATGTATCAACCTTCTTACACCTGCCCGCCACTCCCAAATCCACCTACTCGTCTCCGAAATCATGCAGCCATTAATGTCAGTGATGAAGAAAGCGATGATCATTTAAATGATCAGGGAGGTGACACAGGCATTAATGTACTGGAGCCGGATTGTGCTGATACAACTGCCCGCATGACTTCTCTATGCCAGACGCTACTCCTGATTGTAACAGCTTCGATCCTACTGGGGAATGCTGCTCCCATCCCGGGACGTATTCATGATGGATATGTCTCATTTTCCACAAATGGGTTTCTGGGGCGATTGATGGAGTTCCTCCTCCCCTCCTATGCTCTCATATGGGCCATAAGCCTCCTAGTTAAACTAAAACGGAGATTTGAGGGGAGAAGAAGACTGCCCTTAGAAGCTATGAGGTTGCAGTCTGGCAGAAGGGAAGTGGAGCTGAGAGAGGATGACTTGGATATTGAAAATGGGACTCTACACCATTTCTAA 825 0.4715 MADHLALYSNRLITPPTLDLMHKEEEKRLDGEGSSQQTAELNSNWAMDGYSFSDEEDGFSIKTECRICQEDDHVQNMEAPCACNGSLKYAHRKCIQRWCNEKKSIVCEICQQMYQPSYTCPPLPNPPTRLRNHAAINVSDEESDDHLNDQGGDTGINVLEPDCADTTARMTSLCQTLLLIVTASILLGNAAPIPGRIHDGYVSFSTNGFLGRLMEFLLPSYALIWAISLLVKLKRRFEGRRRLPLEAMRLQSGRREVELREDDLDIENGTLHHF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1772 274 SUPERFAMILY RING/U-box 63 115 - -
Vvi14g1772 274 ProSiteProfiles Zinc finger RING-CH-type profile. 57 117 IPR011016 GO:0008270
Vvi14g1772 274 SMART ringv_2 64 111 IPR011016 GO:0008270
Vvi14g1772 274 Pfam RING-variant domain 65 110 IPR011016 GO:0008270
Vvi14g1772 274 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 234 IPR033275 -
Vvi14g1772 274 CDD RING_CH-C4HC3_MARCH 65 111 - -
Vvi14g1772 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 116 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1772 Vvi-Chr14 28763643 28765178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1772 55 118 C3H Transcription Factor Family AT2G22120 35.938 9.50e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1772 - - vvi:100249210 562.377