Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1771 ATGGCTGATCACTTGGCACTCTACTCTAACCGCCTCCTCACACCCCCCACATTGGAACAGATGCACAAAGAAGAGGAGAAAAGACTAGCCGGAGAAGGCTCCTCCCAGCAGATAGCTGAGCTCTACTCTAACTGGGCAATGGACGGATTCAGCATAAAAGCTGAATGTCGCATTTGTCAGGAAGACGATCTCGCCGGAAACATGGAGGCCCCTTGTGCTTGTAATGGTAGCTTAAAGTATGCCCATAGGAAATGCATCCAAAGGTGGTGCAACGAGAAGAAAAGCATAGTCTGTGAAATATGCCAACAGGCGTATCAACCAAATTACACCTGCCCGCCACTTCCAACTCCACCAACTCGTCTCCGAAATCATGCAGCCATTAATGTCAGTGATGAAGAAAGCGATGATCATTTAAATGATCAGGGAGGTGACACAGGCATTAATGTACTGGAGCCGGATTGTGCTGCTATAACTGCCCGCATGACTTCTCTATGCCAGACGCTACTCCTGATTGTAACAGCTTCGATCCTACTGGGGAATGCTGCTCCCATCTCGGGACGTGTTCATGATGGATATGTCTCATTTTCCACCAAGGGGTTTCTGGGGCGATCGATGGAGTTCCTTCTCCCTTCCTATGCTCTGATATGGGCCATTAGCCTCCTAGTTAAGCTAAAACAGAGATATGAGGGGAGAAGAAGACTGCCCATAGAAGCTATGAGGTTGCAGTCTGGTAGAAGGGAAGTGGAGCTAAGAGAGAATGACTTGGACATTGAAAATGGAAGTATTTTGCTACCATTTGTTTAA 804 0.4751 MADHLALYSNRLLTPPTLEQMHKEEEKRLAGEGSSQQIAELYSNWAMDGFSIKAECRICQEDDLAGNMEAPCACNGSLKYAHRKCIQRWCNEKKSIVCEICQQAYQPNYTCPPLPTPPTRLRNHAAINVSDEESDDHLNDQGGDTGINVLEPDCAAITARMTSLCQTLLLIVTASILLGNAAPISGRVHDGYVSFSTKGFLGRSMEFLLPSYALIWAISLLVKLKQRYEGRRRLPIEAMRLQSGRREVELRENDLDIENGSILLPFV* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1771 267 SMART ringv_2 55 102 IPR011016 GO:0008270
Vvi14g1771 267 CDD RING_CH-C4HC3_MARCH 56 102 - -
Vvi14g1771 267 Pfam RING-variant domain 56 101 IPR011016 GO:0008270
Vvi14g1771 267 Pfam Protein of unknown function (DUF3675) 107 218 IPR022143 -
Vvi14g1771 267 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 226 IPR033275 -
Vvi14g1771 267 ProSiteProfiles Zinc finger RING-CH-type profile. 48 108 IPR011016 GO:0008270
Vvi14g1771 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 107 IPR013083 -
Vvi14g1771 267 SUPERFAMILY RING/U-box 54 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1771 Vvi-Chr14 28760651 28762112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1771 1 109 C3H Transcription Factor Family AT2G22120 32.110 2.97e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1771 - - vvi:100249210 476.863