Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1766 ATGGCGAAGAAGAAGCCAACCCCATCTCCCTCGCCGTCTACTGACTCCGGCGAGAACATAGCAGAGGCAGAGGCCTCAGTCACCGGGGAATGCGAGCGAGCGCTCCTTGTGCTTCGCAAAGGAAACCACGCCAAAGCGCTGAGGCTCATAAAGGACCTCTGCGTTCGCCACCCAAGCTCCGCTGTTGCCCACATTGTTCAAGGCGATATTCTCTGCCAGTTTGCTACTGTAATCGACGACCTCAGACTCAAGCACCGCCACCTCAAGAGCGCGGCGGAGTCAATGCAGCGAGCGACGCTGCTGTCCCCTGATTCGATTGAGTTTGGGTATATGTACGCGAGTGTGTTGTTCGATTTGTGCGAGGATGGTAAAGCATATGAAGAAGTAGTGCAAGAATGTAAAAGGGCATTATCCATTAAACCCAAAAAGGAGAGTCCAGTAAAGGACAGTTATTTGGGAGTGTCTATACCAGTGAAGAACCTTATGGAAACACGAGAAGCTCTGTTCTCCCTAATGAAAATATGTTCTCTTTCGGATTCCGTGAAGAATCTTGAGAATGCGGATGAAGAGGAGAAGCTTGAGTCGATTCATCTTGAGGGGAGTCCAGTATTAATTAAGTCGGTTACCAAGGGACCCATTGAGACTAAGGAGGAAACGGAGACGCAAGATGAGAAGAGGATGGAGATTGAGACCCGGGTAGCAGAAGAAAGGCTTCTTCCCCAGAGGTTGAAGACACCTGAATCCCATAATCAGACAGATGGAGCGTGTGATTTGTTTGTGGGACCTCATAAACCAGGACAAAGAAAGGAGTATCTGAACGAAAAGGTGATTAAGCCACATGTGGATCAGATGGAGCAGATTAAAACTTATTGGAATTCCATAGATGATGACAAGAAGAGGGGGTTGCTTAAAGTGAGAATTTGTGATCTAAAAGCCCATTTTGAATCGTCCAAGGATGATACGGTGATGGAGATTTTATCCGAAGCCATTGGTTTTGCGGAGGAGAATAAATCTTGGTCGTTCTTGGCTTGTTGCCATTGTGATGAGAAATTTGGGGATATTGAACCATACAGAAAGCACATTAATCAGAAGCACATGGGAAGTCTTTCGCCTGAGTTGTGTTCAGTTATGCCCCAAGAAGTTGATAGGCATTGGGCTGATATGATTGTGAAGGGTAGATGGAAGCCAGTTGATATCCCTGCTGCATTAAAAACCCTTGATAGTCATAGCAGTGCAGAAGGTGGAATACATAAGTGGCCGTTGTCGGATGATTCTGAGCGAGAAAAGATCCTTGAGGAAATCCATGTCATGTTCAAAACCCTTCTGAGGCGTAAATACCTTGCTGCAAGTCATCTTAGCCTGATAATGGAGTTCACCGTGATTGAGATGCAGGCTAATTTTTCGGCATCACAGCTTTTAACTCATGGTCTGGACAAAACACCTCTGTGCATCTGCTTTTTGGGAGTTCCTCATCTTCAACAGATTCTTGACTATTTGCGGGTGGTGGCTCAAGCGTGTGGTATACATGATTCTGAGAAGATTGGCTCCATACAAGAGATGGCCAGTGGCAGAGACAAGTTCCAAATCAAAGAAAGAGTTGTTTTATCTGGTGACTCATTGATTCTTCTTTTGGATAAACGCTTCCTGGGAGAAGCTGCCAATGCAGCTAATGGCTGGGCAGTAACTTTTGGTATCAAAGATCAAGGAGATTATGCTCTGCCAGAGACTGATTCCTTAGTGTCTTGGTTATTTAAAGGTCCTTCAATGGAAGAATTGGAAGAAGTGTGGGCACGTCTAAGAGAATTTAGAAAACATAAAGGAGAGGAAATTTTCCATATCCTTGGGAAAGAATTTTCCCTCTTGGAGAGCTTATGTAGGAGAAAATGTGAGCAATTGGGTTATGCAAAAGCACTTGAGTCAGTTGAGAGTATCTGTTTGAAGGAATATAAGGACAGGAAGCAACCGGGGTTTGTTCCACAAAGTTATGAGTCCCTTCTGGAGAGGCGTCGAGAAGAGCTTGAGGATGATGATGCTATGTCTATCAGTGTTCGGTTTGAGTTAGATGTGATATCAAATATTCTTAAAGAAGCACAAGGTCTGAGAGCTGATCAACTCGAACGAGATCAAAATGATTTGGAAAGTGATGAAGATGATGGAAGCGAAGAGGGGGAATACGTGCTTATAGCACTATCAGAAAAAATGGAGAGACATCGAGCTTCTCCTGAGCTTTGCAAACTTGATGCACGGATCATGCAATGTATTGATGGCAGGAAGCAGCTGGAGTTTGAACTTGCAGTAGCATCTTCTGATGACTATAGGCTAGTTATGGCACACTTGGGGGAACTGGCTGAAAAATATGCCAAAGAGAAGTATGATGCCACAACAGAAACAATTCACTTTCCTGCAGCATGCAATGGTACAGATGAACTGAAACAACTGGAAGAAGGTGAACTTGAGTTTATGCTTGAGTTTGAAGCAAATGAAAGAAAGGTCAATGTAGTTTTGGAGTATCAAAGGAGGATGGAGGATGAAGCTAAGCAGAAGCACCTTGCTGAAAAGAAGAAGAAGAAGAAGGCCAGTGAGAGGCTCCACTCCATAGCTGGTTGCTGA 2610 0.446 MAKKKPTPSPSPSTDSGENIAEAEASVTGECERALLVLRKGNHAKALRLIKDLCVRHPSSAVAHIVQGDILCQFATVIDDLRLKHRHLKSAAESMQRATLLSPDSIEFGYMYASVLFDLCEDGKAYEEVVQECKRALSIKPKKESPVKDSYLGVSIPVKNLMETREALFSLMKICSLSDSVKNLENADEEEKLESIHLEGSPVLIKSVTKGPIETKEETETQDEKRMEIETRVAEERLLPQRLKTPESHNQTDGACDLFVGPHKPGQRKEYLNEKVIKPHVDQMEQIKTYWNSIDDDKKRGLLKVRICDLKAHFESSKDDTVMEILSEAIGFAEENKSWSFLACCHCDEKFGDIEPYRKHINQKHMGSLSPELCSVMPQEVDRHWADMIVKGRWKPVDIPAALKTLDSHSSAEGGIHKWPLSDDSEREKILEEIHVMFKTLLRRKYLAASHLSLIMEFTVIEMQANFSASQLLTHGLDKTPLCICFLGVPHLQQILDYLRVVAQACGIHDSEKIGSIQEMASGRDKFQIKERVVLSGDSLILLLDKRFLGEAANAANGWAVTFGIKDQGDYALPETDSLVSWLFKGPSMEELEEVWARLREFRKHKGEEIFHILGKEFSLLESLCRRKCEQLGYAKALESVESICLKEYKDRKQPGFVPQSYESLLERRREELEDDDAMSISVRFELDVISNILKEAQGLRADQLERDQNDLESDEDDGSEEGEYVLIALSEKMERHRASPELCKLDARIMQCIDGRKQLEFELAVASSDDYRLVMAHLGELAEKYAKEKYDATTETIHFPAACNGTDELKQLEEGELEFMLEFEANERKVNVVLEYQRRMEDEAKQKHLAEKKKKKKASERLHSIAGC* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1766 869 MobiDBLite consensus disorder prediction 7 21 - -
Vvi14g1766 869 SUPERFAMILY TPR-like 33 142 IPR011990 GO:0005515
Vvi14g1766 869 Coils Coil 695 722 - -
Vvi14g1766 869 Coils Coil 78 98 - -
Vvi14g1766 869 MobiDBLite consensus disorder prediction 845 869 - -
Vvi14g1766 869 Pfam Protein of unknown function (DUF627) 34 140 IPR006866 -
Vvi14g1766 869 Coils Coil 834 854 - -
Vvi14g1766 869 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 861 - -
Vvi14g1766 869 MobiDBLite consensus disorder prediction 1 23 - -
Vvi14g1766 869 Pfam Protein of unknown function (DUF629) 286 708 IPR006865 -
Vvi14g1766 869 ProSitePatterns Zinc finger C2H2 type domain signature. 344 365 IPR013087 -
Vvi14g1766 869 Gene3D Tetratricopeptide repeat domain 18 183 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1766 Vvi-Chr14 28693368 28697002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1766 30 798 C2H2 Transcription Factor Family AT3G47910 37.742 1.19e-163 516