Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1762 ATGGGTTGGAAGAAGCGAGGCGGTGGTTTGCGCTCTAAGAATCTCCCCACTCCTTCTCCGGCGGCAGACAAGGCGGTGGAGGAGGAAAAAACGGAAGCGCATATCACTTCCGAGATCGCGAGGGCCGAAAAGACGTCCGAAAGAGGGAACCACAGGAGAGCCCTTATGATCATGAAAGAGTTGAGCTCGCGCAACCCGAGCTCAGCCCAGGTTCACTTTTCTCACGCTGGTTTAATTTGTACACAAGCTAAGTCGATGAAAGATCCTACCGCCAAAAAGCGGTATTTAAAGAACGCGTTGGAGCCCGTGCAGCGAGCCATGTCACTGGACCCGGACGAGTTAAAGTACTTTTGTTTCTATCCGTCGTTGATCTTTGACTTGGCCAGCCATGCAGATGCGTACAGAGAGGTGATGCAGGTGGTTGGACGGACGAGGCAGCGTTTGCAAGAACGTGGCCTAGTCCGTGGGATTCTGGATAAGCACATGGAGGCCCTGTTTCTCTGTTCGAGGTATATAGTGTGGCAGCTAGAGCAGAAGAATGTGAATTTTGATGATGAGCAATTTAAGCACAAATATATGGCTAATGCCATGAGAAAAATGAAGCAGATTAAAGCCAAATCGGAAGCAGTTAGGGTGACCCAGAAGACATTGCAATCCATGGACTTCCAAGAAGACTTCCAAGAAGAGGAAGAGATGACTTTGGGAGCTCGTATACTAGAACGAAGAAAGACTCTTACAAATATCAAGAAGCTCACTGCTTTGGGAGATAAGATCACTCAAGTTCAGGGGTACTGGAACTCCTTAAGTGCTGATACGCAGAGGGGATTTCTTAAAGTAAGGATATGTGATCTAAAAGAGCATTTTATTAGGTTCGCCAACAATGATCTGGCGGTGGCAGTTCTGTCGGAAGCTATAGGTTTCTTGCAGGAGAATGATTCTTGGAAGTTCATGGAGTGTTGTGTTTGTGCTGAGAAATTTACTGATCTGTTGTTGTATGCGGAGCATTTTGCTGAGCATATGGGGGGTCTTTCAGAGAGGTTGAGCTTATTTCAGCCACAAGAAATTGATAGTGATTGGGTTGACATTATTGAGAAAGGTGGATGGAAGCCAGAGGATGCCCGTGCCGTATTGCAAATTAGTGAAGATGAGTTGAAACGCAAGTCGTCTAGTCATGTTGAGTGTACAGTGATGGACATGGATGTCCATCTGCAAAATTGCATTAAAGATCCTCGTGAATCCTATTCTGTAGAAGAAATGAAGAAACAATTTGATGAAATGTTGATGGAAGCAGAGATTGGTAATCAAAATGATGAAAAAAGTGGAAACCATGAACCTGAGGGGAGTGAGTGGCCATTACCTGATTACCCTCGTCGTGCAAAAACGCTTGCAAAAATCCAGGGCATGTTACAAATGCTTCTGAAAGGCAGATACCTTTCAAGAACGCATGTTCTCCAGGTGATACGGTACACCCTGGAGGAGCTGCAGATATTTGCTTCAGAATTGCAGCTTAGGAATCTTGGCTTGGACAACACACTTCTGGGAATCTGCCTTTTGGAATTTCCTCAACTTGAAAAAGTCCTAAGATTTTTGCACTCAATAGCCTATATTTGTGGTATAACCAAATTTCCTGAAGAGGGTGGGGCACCTGCTGGAGCTCAGAAGTCTGAAATCAAAGAAACAATTGGTGTTTCTATAGACTCATCATATCTCCTTTTGGATGAACGCTTAGTGACAGGAGAGCTTGATGTCAGCACATCTAACAATTCCAATTCAAATGAGGGCTCTGGATCAACTTTTTCCCTTGAGGATCATGACGATGATACACTGCCAGGTGGTGGTATTTTTGTGCCATGGTTATTTGTGGGTCGTTCCATTGAGGAAAAATTGGAATCATGGGCATGTCTATTAGATGATAGAAAACATAAAAAAATTGAAGTCCATGTTCTTTTCCAGGCACACTTGGAGGATCTGACTGACAAAGATGCCACAGAGAAGGCCTTAGCTGCAGAAGAAGCATTGTTAGCAGACCTTGCCCTTGATGCCGAGAAGAGTGTAGACAGAGGAGATGGTAAAGAAAAACAGACAGAGAAAAAATCAAAGAACAAGAAAAAGAACAAATATTATAGAAAATCTGAGGATCTAAAGCAAAATAAGTTGGGGGAGAGGATAGAGCAGCACTCTTCTGATGAGACAGCCATTGGTACAATTTCACCAGGAGGCTTACAAAAGCAAGAGAGTTCATCAGCAGCTGAACAGAAGACTACTTCGACTGATGAAGTTCCACTAATTCTCCCTCTATTATATGAGAAGCTGGGAGAGGGAAAGTTTGTTTCCTCAAAAGGTAGTGATGATGGTTCAAATGAGGCTAATTATGAGACATATCACAATTTTGCTGAGTCAAGTGAAGGGGTGCCTCAAGGTGGAGCTGGTCTGGAAAATTATGCTAACGATTGCTCCCTGAATGCAATCATACAGTCACTTTGGCATTTGAGATGGTTTAGACGTGAGTTGATGAAATCCGCAGCACATTTGCATATGATAGATGAAGCCTGTGTTTACTGTTCCTTAAATTCGATTTTTTCTTTGTTAAATTCGGCATCCATATCTAGCCATAAAAAGGCGATTAGTCCAGGCCCTTTAAGAGATGCTCTCAGTAATTTGGACCCTCAAAGTAATCTTTACAAGAAGGGAGAAATGAATGATGCTTCAGAAATCTTGCATAAAATTCTTGAAGGTCTTCATCTATCATTCAGTACAAAGAAAGAAGAAAGCAATGGTTGGGAGTCTTGGGACCACTTAGATTGCCCAAGCGACATTTGTATAACACATTCTCTATTTGGAATTAAAATTCGGGAAAGAGTTGCATGCTACCATTGCGGTTGTGAGTCTAGGCAACATGGGTATAATTCCCTTTTTCACCTCATAAATGCAAGTGAACTTAGAAAAAAGAAGATTACCCACATGGATAGCTCTTTCGACAACCTTTTGAAGCTTGTGAAGATGGATGATCAAGTTACTTGCAATCCAGAGGAAGGAGGCTGTGGAAAACTCAATTCCATTGATCAAATCCTTTCAGATCCTCCTCATCTGTTTGTAGTTCTCCTTGGGTGGCAGAGTGTCTCTGAGAATTCAGAAGATGTATCAACAACATTGGCAGCTCTGACAACTGAGATAGATATTGCAGTCATCTATGGAGATTTAGATGAGGGGAGAAAGTATCACCTTATTTCTATGGTAAACTTGAACAATTGCTTCAATTCTGAGCTGCCATGA 3273 0.4274 MGWKKRGGGLRSKNLPTPSPAADKAVEEEKTEAHITSEIARAEKTSERGNHRRALMIMKELSSRNPSSAQVHFSHAGLICTQAKSMKDPTAKKRYLKNALEPVQRAMSLDPDELKYFCFYPSLIFDLASHADAYREVMQVVGRTRQRLQERGLVRGILDKHMEALFLCSRYIVWQLEQKNVNFDDEQFKHKYMANAMRKMKQIKAKSEAVRVTQKTLQSMDFQEDFQEEEEMTLGARILERRKTLTNIKKLTALGDKITQVQGYWNSLSADTQRGFLKVRICDLKEHFIRFANNDLAVAVLSEAIGFLQENDSWKFMECCVCAEKFTDLLLYAEHFAEHMGGLSERLSLFQPQEIDSDWVDIIEKGGWKPEDARAVLQISEDELKRKSSSHVECTVMDMDVHLQNCIKDPRESYSVEEMKKQFDEMLMEAEIGNQNDEKSGNHEPEGSEWPLPDYPRRAKTLAKIQGMLQMLLKGRYLSRTHVLQVIRYTLEELQIFASELQLRNLGLDNTLLGICLLEFPQLEKVLRFLHSIAYICGITKFPEEGGAPAGAQKSEIKETIGVSIDSSYLLLDERLVTGELDVSTSNNSNSNEGSGSTFSLEDHDDDTLPGGGIFVPWLFVGRSIEEKLESWACLLDDRKHKKIEVHVLFQAHLEDLTDKDATEKALAAEEALLADLALDAEKSVDRGDGKEKQTEKKSKNKKKNKYYRKSEDLKQNKLGERIEQHSSDETAIGTISPGGLQKQESSSAAEQKTTSTDEVPLILPLLYEKLGEGKFVSSKGSDDGSNEANYETYHNFAESSEGVPQGGAGLENYANDCSLNAIIQSLWHLRWFRRELMKSAAHLHMIDEACVYCSLNSIFSLLNSASISSHKKAISPGPLRDALSNLDPQSNLYKKGEMNDASEILHKILEGLHLSFSTKKEESNGWESWDHLDCPSDICITHSLFGIKIRERVACYHCGCESRQHGYNSLFHLINASELRKKKITHMDSSFDNLLKLVKMDDQVTCNPEEGGCGKLNSIDQILSDPPHLFVVLLGWQSVSENSEDVSTTLAALTTEIDIAVIYGDLDEGRKYHLISMVNLNNCFNSELP* 1091
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 706 728 - -
Vvi14g1762 1090 Pfam Ubiquitin carboxyl-terminal hydrolase 810 1080 IPR001394 GO:0004843|GO:0016579
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 436 453 - -
Vvi14g1762 1090 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 809 1090 IPR028889 -
Vvi14g1762 1090 ProSitePatterns Zinc finger C2H2 type domain signature. 319 339 IPR013087 -
Vvi14g1762 1090 Pfam Protein of unknown function (DUF629) 260 697 IPR006865 -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 729 757 - -
Vvi14g1762 1090 Pfam Protein of unknown function (DUF627) 41 149 IPR006866 -
Vvi14g1762 1090 PANTHER UBIQUITIN SPECIFIC PROTEINASE 649 1080 - -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 583 598 - -
Vvi14g1762 1090 Gene3D Cysteine proteinases 788 1083 - -
Vvi14g1762 1090 SUPERFAMILY Cysteine proteinases 807 1080 IPR038765 -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 684 757 - -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 1 30 - -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 434 453 - -
Vvi14g1762 1090 MobiDBLite consensus disorder prediction 583 603 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi14g1762 Vvi-Chr14 28664569 28670390 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1762 33 680 C2H2 Transcription Factor Family AT3G47890 26.367 2.62e-65 240