Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1759 ATGACTGTCAAAGGAGGCACAAGCCAGGCATGCGCCGCTTGCAAATACCAAAGAAGAAAGTGCTCGGATCAGTGTCCACTTGCTCCATATTTCCCGGCTAGCAATCCAAAATTGTTTCAAAACGCACATCGGTTATTCGGAGTCAGCAATATGATGAAAATACTAAAGAAAGTGAATGACGATCAAAAGCACGACGCGATGCAGTCTATTATATACGAGTCCAACATGCGGCAACGGTTCCCTGTTCATGGGTGTTGTGGAATAATACGCCAACTTTATCAGCAAGTGCAGCAGACAATGGATGAACTGTGTCATGTAAATGCGAGGCTTCACATGATCAGAGAACAGCAGTTTCACTGTCAAAATAATAACAATAATCTCCCTCTCCCTCCAACACCTTCACAGCATTTGCAGCAGCCGATGATTGGGAGTAATATTATTCCAGTGTATCCATATCAGTTTGATCAGCAGCATCATCATCCTCCTCCTCCTCCAGTTCTAAGAACGCCTGTTGCGCATGTTGGGCCTTCTAACCAGTTGTTGACAAAGGAAAACAAAGGGAGTCATGTAGAAATCAACAAGAAGACAGAAAGATTATTATGGGGTCAGCCAGATTTTGATAATATTAATGGTAATAGCTTAATGGCCTGCCTCCTTCAGTTCTTCACCTCTCAAGTTCCATTCCTTTTGCAAATGGGAGTGCCTCAACATATGATCTCATATAATTGCTGA 732 0.429 MTVKGGTSQACAACKYQRRKCSDQCPLAPYFPASNPKLFQNAHRLFGVSNMMKILKKVNDDQKHDAMQSIIYESNMRQRFPVHGCCGIIRQLYQQVQQTMDELCHVNARLHMIREQQFHCQNNNNNLPLPPTPSQHLQQPMIGSNIIPVYPYQFDQQHHHPPPPPVLRTPVAHVGPSNQLLTKENKGSHVEINKKTERLLWGQPDFDNINGNSLMACLLQFFTSQVPFLLQMGVPQHMISYNC* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1759 243 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Vvi14g1759 243 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Vvi14g1759 243 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1759 Vvi-Chr14 28646091 28646822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1759 1 114 AS2 family AT3G47870 58.772 1.10e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi14g1759 LOB 2.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1759 - - vvi:104881687 404.445