Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1754 ATGCAGATATTGGAGAGGAAGATTGAACTGGCCAAATTAGAAGTTGTTGACTGTGGAAAGCCAATTGATGAAGCAATATCTGATATGGTTTCTGTTGCTGGGTGTTTCAAGTATTATGCAGAACTTGCAGAAGCTTTAGATGCAAAGCAAAGGATTCCTATCTCTATTCCTATGGAATCATTTAAGACTCATGTTCTTAAAGAGCCAATTGGAGTTGTTGCGCTGATCACTCCTTGGAACTACCCTCTTTTGATGGCTGCATGGAAAGTTGCTCCTGCTCTGGCTGCTGGCTGTACTGCTATACTGAAGCCATCTGAATTGGCATCTGTGACTTGTTTGGAGTTAGCTGAAGTTTGTAGAGATGTGGCTCTTCCTCCTGGCGTGCTAAACATTTTGACTGGATTAGGCCCAGAAGCCGGTGCTCCTCTGGCATCTCATCCTCATGTTGATAAGATTGCATTTACTGGAAGCACTGCAACAGGAATCAAAATCATGACAACTGCAGCTCAAACGATCAAGCCTATTTCACTAGAGCTTGGTGGAAAGAGTCCAATTCTTGTGTTTGAGGATGTAGATCTTGATAACGCCATAGAATGGACTCTTTATGGTTGCTTTCCAAATAATGGTCAAATCTGCAGTGCAACTTCCCGGCTTCTTGTTCATGAAAATATTGCAGCAAAATTCGTGGAAAAACTCATTCAATGGAGTAAAAGCATCAAAATTTCAGATCCACTGGAAGAAGGTTGCAGGCTTGGCGCTATTGTTAGTGAAGGACAGTATGAGAAGATACTGAATTTTATTTCAACCGCTAAGAGTGAAGGTGCTACCATTCTGTATGGAGGAGTCCGCCCTCAGCATTTGAAGAAAGGATTCTTTATTGAACCGACCATCATAACAGATGTTAGTACCTCCATGCAAATTTGGAGGGAGGAGGTTTTTGGACCTGTTTTATGTGTCAAAACATTTGCCACTGAAGAAGAAGCCACTCAACTAGCCAATGATACTCATTACGGGTTGGGAGCTGCTGTGGTTTCCAATGATCTAGAAAGGTGTGAGCGCTTGACCAAGGTTCTTCAGGCAGGGGTTGTATGGGTGAACTGCTCTCAACCCTGCTTTGATCAAGCTCCTTGGGGAGGCATTAAGCATAGCGGTATTGGGCGTGAATTAGGGGAATGGGGCCTTGAAAACTACTTGACTGTAAAGCAAGTCACACAGTACACCTCTGATAAGCAATGGGGTTGGTATTCTCCTCCATAA 1257 0.4336 MQILERKIELAKLEVVDCGKPIDEAISDMVSVAGCFKYYAELAEALDAKQRIPISIPMESFKTHVLKEPIGVVALITPWNYPLLMAAWKVAPALAAGCTAILKPSELASVTCLELAEVCRDVALPPGVLNILTGLGPEAGAPLASHPHVDKIAFTGSTATGIKIMTTAAQTIKPISLELGGKSPILVFEDVDLDNAIEWTLYGCFPNNGQICSATSRLLVHENIAAKFVEKLIQWSKSIKISDPLEEGCRLGAIVSEGQYEKILNFISTAKSEGATILYGGVRPQHLKKGFFIEPTIITDVSTSMQIWREEVFGPVLCVKTFATEEEATQLANDTHYGLGAAVVSNDLERCERLTKVLQAGVVWVNCSQPCFDQAPWGGIKHSGIGRELGEWGLENYLTVKQVTQYTSDKQWGWYSPP* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1754 418 SUPERFAMILY ALDH-like 3 406 IPR016161 GO:0016491
Vvi14g1754 418 CDD ALDH_F10_BADH 2 405 - -
Vvi14g1754 418 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 3 401 IPR016162 GO:0016491
Vvi14g1754 418 Pfam Aldehyde dehydrogenase family 3 403 IPR015590 GO:0016491
Vvi14g1754 418 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 177 184 IPR029510 GO:0016491
Vvi14g1754 418 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 1 191 - -
Vvi14g1754 418 PANTHER ALDEHYDE DEHYDROGENASE 3 416 - -
Vvi14g1754 418 FunFam Betaine aldehyde dehydrogenase 181 372 - -
Vvi14g1754 418 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 185 376 IPR016163 GO:0016620
Vvi14g1754 418 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 205 216 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1754 Vvi-Chr14 28602644 28606815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1754 2 418 Aldehyde Dehydrogenase Gene Family AT1G74920 76.739 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1754 K00130 - vvi:100250859 843.958