Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1750 ATGTCGTCGTTTGTTTCTCGGGAAAATGATCCCAAAGCACAGTACTTCTACAGTCGGAAAGAGAAATCCCTTGGCCTCTTGTGCACCAACTTTTTGAGCTTGTACGACCGGGAGGACGTCGAATCGATCGGACTCGACGATGCTGCAAGCCGATTAGGAGTTGAGCGGCGAAGGATTTATGATATTGTCAATATCTTAGAGAGTGTCGGTATTTTAGCGAGGAAAGCCAAGAATCAGTATTCGTGGAAGGGTTTTGGGGCAATTCCTAGGGCTTTGGAGGAGCTCAAGGAGGAGGGTTTGAGAGAGAACTTCAGTATCTCAGACTGCTGCAACTTTGCAAAATCTCTAGATGACATAGAAGAGGGTGGGTCTTCCAATTCAAAATCTGATGGGCAAGACAGATCTTCTGGATTATCAAAAAATGATAACAGAAGAGAGAAATCTCTTGGGCTTCTTACACGGAATTTTATCAAGCTTTTCCTTTGCTCGGATGCAGATTTGATCTCCTTAGATTGTGCTGCAATGGCTTTATTGGGTGATGGACACAATTCAACAGCTATGAGAACAAAAGTTAGACGCCTGTATGACATAGCCAATGTGTTATCTTCCATGAACCTAATAGAGAAGACCCCTCACCCAGAGAGCAGAAAACCAGCATTTAGGTGGCTGGGAGTAAAAGGAAAACTCAAGAACGCATCTGCTACTGCTATGGATGTCCAACAGCCTAAGAAGAGAGTGTTCGGGACTGATGTTACCAACTATAGTTTGAAGAGAAATAAGGCGGATTCTTCAACCGATTGGAAGTCAAACCAGAATATAAATATGCCATTGCATATGAAACCTGATGATTTGGAAAACAATGGGGATGGATTGGAGCAGAATTCAAAACATAGCTCAAAGGGGTTTGTATTTGGTCCATTCACTCCTGCATCTGCTCCCGGAGTAGGAGAGTCTGCAAATAAAATCATGAAACCTACACAGGACTGGGAGAGCCTGGCTTCAACCTTTCGTCCTCAGTATCGGAATCAAGCTATCAGTGACCTATTTGGACATTATGTGGAAGCATGGAAGTCATGGTATGTTGAAGTTGCTGGGAAGAAACAGACGAACTCTAGATAA 1119 0.4352 MSSFVSRENDPKAQYFYSRKEKSLGLLCTNFLSLYDREDVESIGLDDAASRLGVERRRIYDIVNILESVGILARKAKNQYSWKGFGAIPRALEELKEEGLRENFSISDCCNFAKSLDDIEEGGSSNSKSDGQDRSSGLSKNDNRREKSLGLLTRNFIKLFLCSDADLISLDCAAMALLGDGHNSTAMRTKVRRLYDIANVLSSMNLIEKTPHPESRKPAFRWLGVKGKLKNASATAMDVQQPKKRVFGTDVTNYSLKRNKADSSTDWKSNQNINMPLHMKPDDLENNGDGLEQNSKHSSKGFVFGPFTPASAPGVGESANKIMKPTQDWESLASTFRPQYRNQAISDLFGHYVEAWKSWYVEVAGKKQTNSR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1750 372 SMART E2F_TDP_2 144 224 IPR003316 GO:0005667|GO:0006355
Vvi14g1750 372 SMART E2F_TDP_2 19 84 IPR003316 GO:0005667|GO:0006355
Vvi14g1750 372 Gene3D - 139 227 IPR036388 -
Vvi14g1750 372 Gene3D - 15 87 IPR036388 -
Vvi14g1750 372 SUPERFAMILY "Winged helix" DNA-binding domain 146 225 IPR036390 -
Vvi14g1750 372 MobiDBLite consensus disorder prediction 261 299 - -
Vvi14g1750 372 FunFam E2F transcription factor-like E2FE 139 226 - -
Vvi14g1750 372 MobiDBLite consensus disorder prediction 261 276 - -
Vvi14g1750 372 PANTHER TRANSCRIPTION FACTOR E2F 14 340 IPR015633 GO:0000978|GO:0006357
Vvi14g1750 372 MobiDBLite consensus disorder prediction 121 142 - -
Vvi14g1750 372 Pfam E2F/DP family winged-helix DNA-binding domain 20 84 IPR003316 GO:0005667|GO:0006355
Vvi14g1750 372 Pfam E2F/DP family winged-helix DNA-binding domain 146 224 IPR003316 GO:0005667|GO:0006355
Vvi14g1750 372 FunFam E2F transcription factor 8 14 86 - -
Vvi14g1750 372 SUPERFAMILY "Winged helix" DNA-binding domain 18 82 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1750 Vvi-Chr14 28573414 28577998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1750 1 363 E2F-DP Transcription Factor Family AT3G01330 53.279 1.30e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi14g1750 E2F_TDP 1.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1750 - K09391 vvi:100266295 749.969