Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi14g1746 ATGAAGCGATTAAGAGATGATGGCTATGTAGGGTCTCAATTCAAACGACCGTACGGTTCGTCTCGCGGGGATTCCTATGGGCAACCCCAAATCCCTGGTGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAGGTAGCATGCCGAAACTAACAACGACTGATGCCTTGACCTATCTCAAGGAGGTGAAGGAGATGTTTCAAGACCAAAGAGAAAAATATGACACGTTCCTTGAGGTCATGAAAGACTTTAAGGCTCAAAGGACTGACACTGCAGGTGTCATAGCAAGGGTGAAGGAGTTATTCAAGGGGCACAATAACTTAATTTTCGGATTTAATACCTTCCTGCCTAAAGGATATGAAATTACCCTCCCAGAGGACGAACCTCCCCCAAAGAAGACAGTTGAGTTTGAAGAAGCTATTAATTTTGTAAACAAAATCAAGAAACGTTTCCAAAATGATGATCATGTCTATAAATCCTTTTTGGACATTTTGAATATGTATCGTAGAGAGAACAAGGACATACATGAGGTCTACCGTGAGGTGGCCGTACTTTTCAGTGATCATAAAGACTTGCTTGAAGAATTTGTAAGATTTTTACCAGAATCTTCGGCAATGCACTCTGCTCAGCATCTTCCATATGGTCGAAACACCATCCAGCGTTATGATGAGCGGAATTCTTCTACGCCCACACTGCGGCAAATGCATGTGGACAAGCAACGTTGCTGGCGGGATAAAATTATTCCTTCCCATGCTGATCGTGACTCTAGCATCTATCGTACCGATCTGGATGATGATAAAGCAATGATGAAGATACACAAGGAGCAGAAGAGACGGACTGAAAAGGAGAACAGGGATAGAAGGAATCGTGATCAGGATGATAGGGAGCCCAGTCATGAAAACAATAGGGACTTCAACTTGCAGCGTCTTCCTGAGAAAAGGAAATCTTCACGGAAGGTTGAAGGTTTTGGGGCAAATCCTATTTTGGCTTCATATGATGATAAAGATGCATTAAAAAGCATGTGCAACCAAGAATTCATCTTCTGTGAAAAAGTTAAGGAGAAGTTATGCAGCATGGATGATTACCAGGCATTCTTAAAGTGCCTTCATATTTATAGCAAAGAAATAATTTCACGGAGTGAATTGCAGACTTTGGTTGCTGACTTACTTGGAAAATATCCAGATCTTATGGATGGTTTCAATGAATTTTTGGAACGTTGTGAGAATATTGAATCTTTGTGGGATGAAGGACATTTATCCAGATCAATGAGAGCAGAGGAGAAAGATAAAGAGCAGAAGCGGGAAATGGAAGGAGCTAAGGAAAAAGATAGATGCAGGGAGAAGTATATGGGAAAATCCATTCAGGAGCTTGACCTCTCTAACTGTGAACGTTGTACTCCAAGCTATCGGCTTTTGCCAGAGGATTATCCCATAGCTATAGCAAAGGAGAGATCAGAGCTGGGCGCTCAAGTGCTAAATGACCAATGGGTATCTGTGACTTCAGGTAGTGAGGATTACTCTTTTAAACATATGCGCCGAAACCAGTATGAAGAAAGCCTGTTTAGGTGTGAAGATGATAGATTTGAGCTGGATATGTTGTTAGAATCTGTGACTTCAGCTGCTAAGCATGCTGAAGATTTGCTGAACTCCATCAGTGATAATAGTGTGGGGAGTCCAATCCAGATTGAAGGCCACTTAACAGTTCTAAATTTACGATGCATCGATCGTTTATATGGTGACCATGCTCTGGATGCATTGGACACATTGCGTAAAAATACATCTCTTGCATTGCCGGTTATATTATCTCGCTTGAAGCAGAAACATGAGGAGTGGTCTAGGTGTCGCTCAGATTTTAACAAAGTTTGGGCTGAAATCTACGCTAAGAACCATTACAAGTCACTTGACCACCGGAGCTTTTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCCCTAGTGGCCGAGATCAAAGAACTTAAAGAGGAAAAGCAGAATGAGGATGATATGCTTTTGGCCATTGCTGCGGGAAACAGACGTTTTGTAAATCCAAATTTGGAGTTTGAATACTCGGATGTCAACATTCATGATGACTTGTATAAGCTTGTCCAATACTCATGTGAAGAGGTCTGCACAACCAATGAGCAGTTGAATAAAGTTATGAGGCTTTGGACTACCTTCTTGGAGCCAATGCTGGGGGTTCCTTCTCGAGTCGACAGGGAAGAGGGTGCTGAAGATGTCGCAAAGGCAAGGCATGGTGCTGTCAAAAGTAGTGCATCAAGCACAGGTGAAAGAGATGGAAGCCCTGGTGCTGAGGCTGCTGTCATGAATTCCAAGCAACCAAATCTTGCCAGTAATGGAGATGAAAATGCTATACCAGAATCAGCAAACTCCTGCAGAGCTAGTTTGGTGAATGGGGATAGTTTACCCAAAGACGATCATGACTCAAGTCACATCTCTAAAGATGATCCTCCCCGGCTTGAGAAAGAGCTAAAGAATGTAGCTGCAACTGAGAAAATTTCTGGATTTAACATACAAGTTGGTTCTGGTGAACAATTAATTGATTCAAATGCGTCACTTGCTACTGGAGCAGAAAACAATCTTGGCAGAGCCCACATGGAAGTGATGTCAGGGCATGTCTCAACTCCTTCAAGGCCTGGCAATGTTGCTATTGAGGAAGCTCATGAACACAAACCTGGTTTTGATGCTTCATCAGAGGGTGGTGATGTTATGAGAACAGTTATATCAGCAAATGGGGTGCTTTCTGAAGGCACTAAATTGAACAAATATCATGCAGAATCTGTTGGACCATCCAAAATTGAAAAAGAAGAGGGAGAATTATCACCTAATGGTGATTTTGAGGAGGATAATTTTGTTGTCTATGGAGATGCTAGTACCCAGGCTGTGCCTTTGGCAAAGCACAGTTCTGAAAGGCGGCAATTCCAAGCAGGTGATGGACAAGAGAGGGATTGCCAGGTTGCTGGAGGAGAAAATGGTGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAGGCTGGTGAAGATGTCTCAGCCAGTGAGTCTGCAGGTGATGAGTGCTCTAGGGGAGAGCAGGAAGAGGAGGAAGATGCAGAACATGATGAGCTTGATGGGAAGGCTGAGAGTGAAGGTGAGGCCGATGGAGTAGCTGATGCAAACTTTGTTGGAGGGAATGGTGTGATATTGCCATTGTCAGAACGTTTTCTACCGACTGTGAAGCCTCTTGCAAAGCATGTGGCTTCATCATTGCATGACAAAGAAAAGAATGATTCTCGGGTTTTTTATGGAAATGACACCTTTTATGTGCTTTTTAGGCTTCATCGAGTACTGTATGAAAGAATTCTATCAGCAAAAGTAAATTCCACATCTGCTGAAATGAAATGGAGAGCTTCAAAGGATACTAATCCTCCCGACTTCTATTCTAGATTTATGAGTGCATTATACAATTTGCTAGATGGTTCTTCTGATAATGCAAAATTTGAGGATGATTGCCGAGCCATTCTTGGCAACCAGTCATATGTGTTGTTCACATTAGACAAACTGATTTATAAATTGGTCAAACAGCTTCAAACTGTTGCTACTGATGAGATGGACAATAAACTTCTTCAACTTTATGACTATGAGAAATCCCGGCGATCTGGGAAGTTTGTTGATTCGGTATATCATGAAAATGCATGTGTTTTTCTTCATGATGATAACATATATAGGTTTGAATATTCATCTTCCCCATCTCGGTTGTCCATCCAGCTGATGGACAGTGGAAGTGAAAAGCCTGAGGTAGTTGCAGTTTCAATGGACCCTAATTTTGCAGCTTATCTGCACAACGATTTTCTGTCATCTCGTCCTAGCAAAAAGGAGCCACTTGGTATTATGCTTCAGAGATCTCGTATGTTCTGGACACAGAAGACTACTTCTTCCGCACCAGATGGAAAAGAAGAAAGTTGA 3975 0.4247 MKRLRDDGYVGSQFKRPYGSSRGDSYGQPQIPGGGGGGGGGGGGGGGGSMPKLTTTDALTYLKEVKEMFQDQREKYDTFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLPEDEPPPKKTVEFEEAINFVNKIKKRFQNDDHVYKSFLDILNMYRRENKDIHEVYREVAVLFSDHKDLLEEFVRFLPESSAMHSAQHLPYGRNTIQRYDERNSSTPTLRQMHVDKQRCWRDKIIPSHADRDSSIYRTDLDDDKAMMKIHKEQKRRTEKENRDRRNRDQDDREPSHENNRDFNLQRLPEKRKSSRKVEGFGANPILASYDDKDALKSMCNQEFIFCEKVKEKLCSMDDYQAFLKCLHIYSKEIISRSELQTLVADLLGKYPDLMDGFNEFLERCENIESLWDEGHLSRSMRAEEKDKEQKREMEGAKEKDRCREKYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSISDNSVGSPIQIEGHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEKQNEDDMLLAIAAGNRRFVNPNLEFEYSDVNIHDDLYKLVQYSCEEVCTTNEQLNKVMRLWTTFLEPMLGVPSRVDREEGAEDVAKARHGAVKSSASSTGERDGSPGAEAAVMNSKQPNLASNGDENAIPESANSCRASLVNGDSLPKDDHDSSHISKDDPPRLEKELKNVAATEKISGFNIQVGSGEQLIDSNASLATGAENNLGRAHMEVMSGHVSTPSRPGNVAIEEAHEHKPGFDASSEGGDVMRTVISANGVLSEGTKLNKYHAESVGPSKIEKEEGELSPNGDFEEDNFVVYGDASTQAVPLAKHSSERRQFQAGDGQERDCQVAGGENGADADDEDSENVSEAGEDVSASESAGDECSRGEQEEEEDAEHDELDGKAESEGEADGVADANFVGGNGVILPLSERFLPTVKPLAKHVASSLHDKEKNDSRVFYGNDTFYVLFRLHRVLYERILSAKVNSTSAEMKWRASKDTNPPDFYSRFMSALYNLLDGSSDNAKFEDDCRAILGNQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYDYEKSRRSGKFVDSVYHENACVFLHDDNIYRFEYSSSPSRLSIQLMDSGSEKPEVVAVSMDPNFAAYLHNDFLSSRPSKKEPLGIMLQRSRMFWTQKTTSSAPDGKEES* 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 741 755 - -
Vvi14g1746 1324 Coils Coil 265 292 - -
Vvi14g1746 1324 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Vvi14g1746 1324 Gene3D Paired amphipathic helix 57 119 IPR036600 GO:0006355
Vvi14g1746 1324 ProSiteProfiles PAH domain profile. 50 121 IPR003822 GO:0006355
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 972 1061 - -
Vvi14g1746 1324 Pfam Sin3 family co-repressor 465 556 IPR013194 -
Vvi14g1746 1324 SUPERFAMILY PAH2 domain 51 120 IPR036600 GO:0006355
Vvi14g1746 1324 FunFam Paired amphipathic helix protein Sin3 57 119 - -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 1031 1046 - -
Vvi14g1746 1324 Gene3D Paired amphipathic helix 134 206 IPR036600 GO:0006355
Vvi14g1746 1324 ProSiteProfiles PAH domain profile. 135 205 IPR003822 GO:0006355
Vvi14g1746 1324 SUPERFAMILY PAH2 domain 131 203 IPR036600 GO:0006355
Vvi14g1746 1324 FunFam Paired amphipathic helix protein SIN3 337 411 - -
Vvi14g1746 1324 Coils Coil 424 444 - -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 1 52 - -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 938 959 - -
Vvi14g1746 1324 Coils Coil 653 673 - -
Vvi14g1746 1324 SUPERFAMILY PAH2 domain 341 407 IPR036600 GO:0006355
Vvi14g1746 1324 Pfam C-terminal domain of Sin3a protein 1104 1312 IPR031693 -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 741 776 - -
Vvi14g1746 1324 PANTHER SIN3B-RELATED 51 1248 IPR039774 GO:0003714
Vvi14g1746 1324 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Vvi14g1746 1324 Pfam Paired amphipathic helix repeat 74 118 IPR003822 GO:0006355
Vvi14g1746 1324 Pfam Paired amphipathic helix repeat 158 202 IPR003822 GO:0006355
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 804 830 - -
Vvi14g1746 1324 FunFam Paired amphipathic helix SIN3-like protein 134 205 - -
Vvi14g1746 1324 SMART hdac_interact2seq4b 463 563 IPR013194 -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 810 830 - -
Vvi14g1746 1324 MobiDBLite consensus disorder prediction 269 321 - -
Vvi14g1746 1324 Gene3D Paired amphipathic helix 337 411 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi14g1746 Vvi-Chr14 28545825 28557101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi14g1746 46 154 WRKY Transcription Factor Family AT4G12020 53.636 3.45e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi14g1746 Sin3a_C 4.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi14g1746 K11644 - vvi:100254234 2543.46